# http://pyrocko.org - GPLv3
#
# The Pyrocko Developers, 21st Century
# ---|P------/S----------~Lg----------
'''
A Python interface to GMT.
'''
# This file is part of GmtPy (http://emolch.github.io/gmtpy/)
# See there for copying and licensing information.
from __future__ import print_function, absolute_import
import subprocess
try:
from StringIO import StringIO as BytesIO
except ImportError:
from io import BytesIO
import re
import os
import sys
import shutil
from os.path import join as pjoin
import tempfile
import random
import logging
import math
import numpy as num
import copy
from select import select
from scipy.io import netcdf
from pyrocko import ExternalProgramMissing
try:
newstr = unicode
except NameError:
newstr = str
find_bb = re.compile(br'%%BoundingBox:((\s+[-0-9]+){4})')
find_hiresbb = re.compile(br'%%HiResBoundingBox:((\s+[-0-9.]+){4})')
encoding_gmt_to_python = {
'isolatin1+': 'iso-8859-1',
'standard+': 'ascii',
'isolatin1': 'iso-8859-1',
'standard': 'ascii'}
for i in range(1, 11):
encoding_gmt_to_python['iso-8859-%i' % i] = 'iso-8859-%i' % i
def have_gmt():
try:
get_gmt_installation('newest')
return True
except GMTInstallationProblem:
return False
def check_have_gmt():
if not have_gmt():
raise ExternalProgramMissing('GMT is not installed or cannot be found')
def have_pixmaptools():
for prog in [['pdftocairo'], ['convert'], ['gs', '-h']]:
try:
p = subprocess.Popen(
prog,
stdout=subprocess.PIPE, stderr=subprocess.PIPE)
(stdout, stderr) = p.communicate()
except OSError:
return False
return True
class GmtPyError(Exception):
pass
class GMTError(GmtPyError):
pass
class GMTInstallationProblem(GmtPyError):
pass
def convert_graph(in_filename, out_filename, resolution=75., oversample=2.,
width=None, height=None, size=None):
_, tmp_filename_base = tempfile.mkstemp()
try:
if out_filename.endswith('.svg'):
fmt_arg = '-svg'
tmp_filename = tmp_filename_base
oversample = 1.0
else:
fmt_arg = '-png'
tmp_filename = tmp_filename_base + '-1.png'
if size is not None:
scale_args = ['-scale-to', '%i' % int(round(size*oversample))]
elif width is not None:
scale_args = ['-scale-to-x', '%i' % int(round(width*oversample))]
elif height is not None:
scale_args = ['-scale-to-y', '%i' % int(round(height*oversample))]
else:
scale_args = ['-r', '%i' % int(round(resolution * oversample))]
try:
subprocess.check_call(
['pdftocairo'] + scale_args +
[fmt_arg, in_filename, tmp_filename_base])
except OSError as e:
raise GmtPyError(
'Cannot start `pdftocairo`, is it installed? (%s)' % str(e))
if oversample > 1.:
try:
subprocess.check_call([
'convert',
tmp_filename,
'-resize', '%i%%' % int(round(100.0/oversample)),
out_filename])
except OSError as e:
raise GmtPyError(
'Cannot start `convert`, is it installed? (%s)' % str(e))
else:
if out_filename.endswith('.png') or out_filename.endswith('.svg'):
shutil.move(tmp_filename, out_filename)
else:
try:
subprocess.check_call(
['convert', tmp_filename, out_filename])
except Exception as e:
raise GmtPyError(
'Cannot start `convert`, is it installed? (%s)'
% str(e))
except Exception:
raise
finally:
if os.path.exists(tmp_filename_base):
os.remove(tmp_filename_base)
if os.path.exists(tmp_filename):
os.remove(tmp_filename)
def get_bbox(s):
for pat in [find_hiresbb, find_bb]:
m = pat.search(s)
if m:
bb = [float(x) for x in m.group(1).split()]
return bb
raise GmtPyError('Cannot find bbox')
def replace_bbox(bbox, *args):
def repl(m):
if m.group(1):
return ('%%HiResBoundingBox: ' + ' '.join(
'%.3f' % float(x) for x in bbox)).encode('ascii')
else:
return ('%%%%BoundingBox: %i %i %i %i' % (
int(math.floor(bbox[0])),
int(math.floor(bbox[1])),
int(math.ceil(bbox[2])),
int(math.ceil(bbox[3])))).encode('ascii')
pat = re.compile(br'%%(HiRes)?BoundingBox:((\s+[0-9.]+){4})')
if len(args) == 1:
s = args[0]
return pat.sub(repl, s)
else:
fin, fout = args
nn = 0
for line in fin:
line, n = pat.subn(repl, line)
nn += n
fout.write(line)
if nn == 2:
break
if nn == 2:
for line in fin:
fout.write(line)
def escape_shell_arg(s):
'''
This function should be used for debugging output only - it could be
insecure.
'''
if re.search(r'[^a-zA-Z0-9._/=-]', s):
return "'" + s.replace("'", "'\\''") + "'"
else:
return s
def escape_shell_args(args):
'''
This function should be used for debugging output only - it could be
insecure.
'''
return ' '.join([escape_shell_arg(x) for x in args])
golden_ratio = 1.61803
# units in points
_units = {
'i': 72.,
'c': 72./2.54,
'm': 72.*100./2.54,
'p': 1.}
inch = _units['i']
cm = _units['c']
# some awsome colors
tango_colors = {
'butter1': (252, 233, 79),
'butter2': (237, 212, 0),
'butter3': (196, 160, 0),
'chameleon1': (138, 226, 52),
'chameleon2': (115, 210, 22),
'chameleon3': (78, 154, 6),
'orange1': (252, 175, 62),
'orange2': (245, 121, 0),
'orange3': (206, 92, 0),
'skyblue1': (114, 159, 207),
'skyblue2': (52, 101, 164),
'skyblue3': (32, 74, 135),
'plum1': (173, 127, 168),
'plum2': (117, 80, 123),
'plum3': (92, 53, 102),
'chocolate1': (233, 185, 110),
'chocolate2': (193, 125, 17),
'chocolate3': (143, 89, 2),
'scarletred1': (239, 41, 41),
'scarletred2': (204, 0, 0),
'scarletred3': (164, 0, 0),
'aluminium1': (238, 238, 236),
'aluminium2': (211, 215, 207),
'aluminium3': (186, 189, 182),
'aluminium4': (136, 138, 133),
'aluminium5': (85, 87, 83),
'aluminium6': (46, 52, 54)
}
graph_colors = [tango_colors[_x] for _x in (
'scarletred2', 'skyblue3', 'chameleon3', 'orange2', 'plum2', 'chocolate2',
'butter2')]
[docs]def color(x=None):
'''
Generate a string for GMT option arguments expecting a color.
If ``x`` is None, a random color is returned. If it is an integer, the
corresponding ``gmtpy.graph_colors[x]`` or black returned. If it is a
string and the corresponding ``gmtpy.tango_colors[x]`` exists, this is
returned, or the string is passed through. If ``x`` is a tuple, it is
transformed into the string form which GMT expects.
'''
if x is None:
return '%i/%i/%i' % tuple(random.randint(0, 255) for _ in 'rgb')
if isinstance(x, int):
if 0 <= x < len(graph_colors):
return '%i/%i/%i' % graph_colors[x]
else:
return '0/0/0'
elif isinstance(x, str):
if x in tango_colors:
return '%i/%i/%i' % tango_colors[x]
else:
return x
return '%i/%i/%i' % x
[docs]def color_tup(x=None):
if x is None:
return tuple([random.randint(0, 255) for _x in 'rgb'])
if isinstance(x, int):
if 0 <= x < len(graph_colors):
return graph_colors[x]
else:
return (0, 0, 0)
elif isinstance(x, str):
if x in tango_colors:
return tango_colors[x]
return x
_gmt_installations = {}
# Set fixed installation(s) to use...
# (use this, if you want to use different GMT versions simultaneously.)
# _gmt_installations['4.2.1'] = {'home': '/sw/etch-ia32/gmt-4.2.1',
# 'bin': '/sw/etch-ia32/gmt-4.2.1/bin'}
# _gmt_installations['4.3.0'] = {'home': '/sw/etch-ia32/gmt-4.3.0',
# 'bin': '/sw/etch-ia32/gmt-4.3.0/bin'}
# _gmt_installations['4.3.1'] = {'home': '/sw/share/gmt',
# 'bin': '/sw/bin' }
# ... or let GmtPy autodetect GMT via $PATH and $GMTHOME
def key_version(a):
a = a.split('_')[0] # get rid of revision id
return [int(x) for x in a.split('.')]
def newest_installed_gmt_version():
return sorted(_gmt_installations.keys(), key=key_version)[-1]
def all_installed_gmt_versions():
return sorted(_gmt_installations.keys(), key=key_version)
# To have consistent defaults, they are hardcoded here and should not be
# changed.
_gmt_defaults_by_version = {}
_gmt_defaults_by_version['4.2.1'] = r'''
#
# GMT-SYSTEM 4.2.1 Defaults file
#
#-------- Plot Media Parameters -------------
PAGE_COLOR = 255/255/255
PAGE_ORIENTATION = portrait
PAPER_MEDIA = a4+
#-------- Basemap Annotation Parameters ------
ANNOT_MIN_ANGLE = 20
ANNOT_MIN_SPACING = 0
ANNOT_FONT_PRIMARY = Helvetica
ANNOT_FONT_SIZE = 12p
ANNOT_OFFSET_PRIMARY = 0.075i
ANNOT_FONT_SECONDARY = Helvetica
ANNOT_FONT_SIZE_SECONDARY = 16p
ANNOT_OFFSET_SECONDARY = 0.075i
DEGREE_SYMBOL = ring
HEADER_FONT = Helvetica
HEADER_FONT_SIZE = 36p
HEADER_OFFSET = 0.1875i
LABEL_FONT = Helvetica
LABEL_FONT_SIZE = 14p
LABEL_OFFSET = 0.1125i
OBLIQUE_ANNOTATION = 1
PLOT_CLOCK_FORMAT = hh:mm:ss
PLOT_DATE_FORMAT = yyyy-mm-dd
PLOT_DEGREE_FORMAT = +ddd:mm:ss
Y_AXIS_TYPE = hor_text
#-------- Basemap Layout Parameters ---------
BASEMAP_AXES = WESN
BASEMAP_FRAME_RGB = 0/0/0
BASEMAP_TYPE = plain
FRAME_PEN = 1.25p
FRAME_WIDTH = 0.075i
GRID_CROSS_SIZE_PRIMARY = 0i
GRID_CROSS_SIZE_SECONDARY = 0i
GRID_PEN_PRIMARY = 0.25p
GRID_PEN_SECONDARY = 0.5p
MAP_SCALE_HEIGHT = 0.075i
TICK_LENGTH = 0.075i
POLAR_CAP = 85/90
TICK_PEN = 0.5p
X_AXIS_LENGTH = 9i
Y_AXIS_LENGTH = 6i
X_ORIGIN = 1i
Y_ORIGIN = 1i
UNIX_TIME = FALSE
UNIX_TIME_POS = -0.75i/-0.75i
#-------- Color System Parameters -----------
COLOR_BACKGROUND = 0/0/0
COLOR_FOREGROUND = 255/255/255
COLOR_NAN = 128/128/128
COLOR_IMAGE = adobe
COLOR_MODEL = rgb
HSV_MIN_SATURATION = 1
HSV_MAX_SATURATION = 0.1
HSV_MIN_VALUE = 0.3
HSV_MAX_VALUE = 1
#-------- PostScript Parameters -------------
CHAR_ENCODING = ISOLatin1+
DOTS_PR_INCH = 300
N_COPIES = 1
PS_COLOR = rgb
PS_IMAGE_COMPRESS = none
PS_IMAGE_FORMAT = ascii
PS_LINE_CAP = round
PS_LINE_JOIN = miter
PS_MITER_LIMIT = 35
PS_VERBOSE = FALSE
GLOBAL_X_SCALE = 1
GLOBAL_Y_SCALE = 1
#-------- I/O Format Parameters -------------
D_FORMAT = %lg
FIELD_DELIMITER = tab
GRIDFILE_SHORTHAND = FALSE
GRID_FORMAT = nf
INPUT_CLOCK_FORMAT = hh:mm:ss
INPUT_DATE_FORMAT = yyyy-mm-dd
IO_HEADER = FALSE
N_HEADER_RECS = 1
OUTPUT_CLOCK_FORMAT = hh:mm:ss
OUTPUT_DATE_FORMAT = yyyy-mm-dd
OUTPUT_DEGREE_FORMAT = +D
XY_TOGGLE = FALSE
#-------- Projection Parameters -------------
ELLIPSOID = WGS-84
MAP_SCALE_FACTOR = default
MEASURE_UNIT = inch
#-------- Calendar/Time Parameters ----------
TIME_FORMAT_PRIMARY = full
TIME_FORMAT_SECONDARY = full
TIME_EPOCH = 2000-01-01T00:00:00
TIME_IS_INTERVAL = OFF
TIME_INTERVAL_FRACTION = 0.5
TIME_LANGUAGE = us
TIME_SYSTEM = other
TIME_UNIT = d
TIME_WEEK_START = Sunday
Y2K_OFFSET_YEAR = 1950
#-------- Miscellaneous Parameters ----------
HISTORY = TRUE
INTERPOLANT = akima
LINE_STEP = 0.01i
VECTOR_SHAPE = 0
VERBOSE = FALSE'''
_gmt_defaults_by_version['4.3.0'] = r'''
#
# GMT-SYSTEM 4.3.0 Defaults file
#
#-------- Plot Media Parameters -------------
PAGE_COLOR = 255/255/255
PAGE_ORIENTATION = portrait
PAPER_MEDIA = a4+
#-------- Basemap Annotation Parameters ------
ANNOT_MIN_ANGLE = 20
ANNOT_MIN_SPACING = 0
ANNOT_FONT_PRIMARY = Helvetica
ANNOT_FONT_SIZE_PRIMARY = 12p
ANNOT_OFFSET_PRIMARY = 0.075i
ANNOT_FONT_SECONDARY = Helvetica
ANNOT_FONT_SIZE_SECONDARY = 16p
ANNOT_OFFSET_SECONDARY = 0.075i
DEGREE_SYMBOL = ring
HEADER_FONT = Helvetica
HEADER_FONT_SIZE = 36p
HEADER_OFFSET = 0.1875i
LABEL_FONT = Helvetica
LABEL_FONT_SIZE = 14p
LABEL_OFFSET = 0.1125i
OBLIQUE_ANNOTATION = 1
PLOT_CLOCK_FORMAT = hh:mm:ss
PLOT_DATE_FORMAT = yyyy-mm-dd
PLOT_DEGREE_FORMAT = +ddd:mm:ss
Y_AXIS_TYPE = hor_text
#-------- Basemap Layout Parameters ---------
BASEMAP_AXES = WESN
BASEMAP_FRAME_RGB = 0/0/0
BASEMAP_TYPE = plain
FRAME_PEN = 1.25p
FRAME_WIDTH = 0.075i
GRID_CROSS_SIZE_PRIMARY = 0i
GRID_PEN_PRIMARY = 0.25p
GRID_CROSS_SIZE_SECONDARY = 0i
GRID_PEN_SECONDARY = 0.5p
MAP_SCALE_HEIGHT = 0.075i
POLAR_CAP = 85/90
TICK_LENGTH = 0.075i
TICK_PEN = 0.5p
X_AXIS_LENGTH = 9i
Y_AXIS_LENGTH = 6i
X_ORIGIN = 1i
Y_ORIGIN = 1i
UNIX_TIME = FALSE
UNIX_TIME_POS = BL/-0.75i/-0.75i
UNIX_TIME_FORMAT = %Y %b %d %H:%M:%S
#-------- Color System Parameters -----------
COLOR_BACKGROUND = 0/0/0
COLOR_FOREGROUND = 255/255/255
COLOR_NAN = 128/128/128
COLOR_IMAGE = adobe
COLOR_MODEL = rgb
HSV_MIN_SATURATION = 1
HSV_MAX_SATURATION = 0.1
HSV_MIN_VALUE = 0.3
HSV_MAX_VALUE = 1
#-------- PostScript Parameters -------------
CHAR_ENCODING = ISOLatin1+
DOTS_PR_INCH = 300
N_COPIES = 1
PS_COLOR = rgb
PS_IMAGE_COMPRESS = none
PS_IMAGE_FORMAT = ascii
PS_LINE_CAP = round
PS_LINE_JOIN = miter
PS_MITER_LIMIT = 35
PS_VERBOSE = FALSE
GLOBAL_X_SCALE = 1
GLOBAL_Y_SCALE = 1
#-------- I/O Format Parameters -------------
D_FORMAT = %lg
FIELD_DELIMITER = tab
GRIDFILE_SHORTHAND = FALSE
GRID_FORMAT = nf
INPUT_CLOCK_FORMAT = hh:mm:ss
INPUT_DATE_FORMAT = yyyy-mm-dd
IO_HEADER = FALSE
N_HEADER_RECS = 1
OUTPUT_CLOCK_FORMAT = hh:mm:ss
OUTPUT_DATE_FORMAT = yyyy-mm-dd
OUTPUT_DEGREE_FORMAT = +D
XY_TOGGLE = FALSE
#-------- Projection Parameters -------------
ELLIPSOID = WGS-84
MAP_SCALE_FACTOR = default
MEASURE_UNIT = inch
#-------- Calendar/Time Parameters ----------
TIME_FORMAT_PRIMARY = full
TIME_FORMAT_SECONDARY = full
TIME_EPOCH = 2000-01-01T00:00:00
TIME_IS_INTERVAL = OFF
TIME_INTERVAL_FRACTION = 0.5
TIME_LANGUAGE = us
TIME_UNIT = d
TIME_WEEK_START = Sunday
Y2K_OFFSET_YEAR = 1950
#-------- Miscellaneous Parameters ----------
HISTORY = TRUE
INTERPOLANT = akima
LINE_STEP = 0.01i
VECTOR_SHAPE = 0
VERBOSE = FALSE'''
_gmt_defaults_by_version['4.3.1'] = r'''
#
# GMT-SYSTEM 4.3.1 Defaults file
#
#-------- Plot Media Parameters -------------
PAGE_COLOR = 255/255/255
PAGE_ORIENTATION = portrait
PAPER_MEDIA = a4+
#-------- Basemap Annotation Parameters ------
ANNOT_MIN_ANGLE = 20
ANNOT_MIN_SPACING = 0
ANNOT_FONT_PRIMARY = Helvetica
ANNOT_FONT_SIZE_PRIMARY = 12p
ANNOT_OFFSET_PRIMARY = 0.075i
ANNOT_FONT_SECONDARY = Helvetica
ANNOT_FONT_SIZE_SECONDARY = 16p
ANNOT_OFFSET_SECONDARY = 0.075i
DEGREE_SYMBOL = ring
HEADER_FONT = Helvetica
HEADER_FONT_SIZE = 36p
HEADER_OFFSET = 0.1875i
LABEL_FONT = Helvetica
LABEL_FONT_SIZE = 14p
LABEL_OFFSET = 0.1125i
OBLIQUE_ANNOTATION = 1
PLOT_CLOCK_FORMAT = hh:mm:ss
PLOT_DATE_FORMAT = yyyy-mm-dd
PLOT_DEGREE_FORMAT = +ddd:mm:ss
Y_AXIS_TYPE = hor_text
#-------- Basemap Layout Parameters ---------
BASEMAP_AXES = WESN
BASEMAP_FRAME_RGB = 0/0/0
BASEMAP_TYPE = plain
FRAME_PEN = 1.25p
FRAME_WIDTH = 0.075i
GRID_CROSS_SIZE_PRIMARY = 0i
GRID_PEN_PRIMARY = 0.25p
GRID_CROSS_SIZE_SECONDARY = 0i
GRID_PEN_SECONDARY = 0.5p
MAP_SCALE_HEIGHT = 0.075i
POLAR_CAP = 85/90
TICK_LENGTH = 0.075i
TICK_PEN = 0.5p
X_AXIS_LENGTH = 9i
Y_AXIS_LENGTH = 6i
X_ORIGIN = 1i
Y_ORIGIN = 1i
UNIX_TIME = FALSE
UNIX_TIME_POS = BL/-0.75i/-0.75i
UNIX_TIME_FORMAT = %Y %b %d %H:%M:%S
#-------- Color System Parameters -----------
COLOR_BACKGROUND = 0/0/0
COLOR_FOREGROUND = 255/255/255
COLOR_NAN = 128/128/128
COLOR_IMAGE = adobe
COLOR_MODEL = rgb
HSV_MIN_SATURATION = 1
HSV_MAX_SATURATION = 0.1
HSV_MIN_VALUE = 0.3
HSV_MAX_VALUE = 1
#-------- PostScript Parameters -------------
CHAR_ENCODING = ISOLatin1+
DOTS_PR_INCH = 300
N_COPIES = 1
PS_COLOR = rgb
PS_IMAGE_COMPRESS = none
PS_IMAGE_FORMAT = ascii
PS_LINE_CAP = round
PS_LINE_JOIN = miter
PS_MITER_LIMIT = 35
PS_VERBOSE = FALSE
GLOBAL_X_SCALE = 1
GLOBAL_Y_SCALE = 1
#-------- I/O Format Parameters -------------
D_FORMAT = %lg
FIELD_DELIMITER = tab
GRIDFILE_SHORTHAND = FALSE
GRID_FORMAT = nf
INPUT_CLOCK_FORMAT = hh:mm:ss
INPUT_DATE_FORMAT = yyyy-mm-dd
IO_HEADER = FALSE
N_HEADER_RECS = 1
OUTPUT_CLOCK_FORMAT = hh:mm:ss
OUTPUT_DATE_FORMAT = yyyy-mm-dd
OUTPUT_DEGREE_FORMAT = +D
XY_TOGGLE = FALSE
#-------- Projection Parameters -------------
ELLIPSOID = WGS-84
MAP_SCALE_FACTOR = default
MEASURE_UNIT = inch
#-------- Calendar/Time Parameters ----------
TIME_FORMAT_PRIMARY = full
TIME_FORMAT_SECONDARY = full
TIME_EPOCH = 2000-01-01T00:00:00
TIME_IS_INTERVAL = OFF
TIME_INTERVAL_FRACTION = 0.5
TIME_LANGUAGE = us
TIME_UNIT = d
TIME_WEEK_START = Sunday
Y2K_OFFSET_YEAR = 1950
#-------- Miscellaneous Parameters ----------
HISTORY = TRUE
INTERPOLANT = akima
LINE_STEP = 0.01i
VECTOR_SHAPE = 0
VERBOSE = FALSE'''
_gmt_defaults_by_version['4.4.0'] = r'''
#
# GMT-SYSTEM 4.4.0 [64-bit] Defaults file
#
#-------- Plot Media Parameters -------------
PAGE_COLOR = 255/255/255
PAGE_ORIENTATION = portrait
PAPER_MEDIA = a4+
#-------- Basemap Annotation Parameters ------
ANNOT_MIN_ANGLE = 20
ANNOT_MIN_SPACING = 0
ANNOT_FONT_PRIMARY = Helvetica
ANNOT_FONT_SIZE_PRIMARY = 14p
ANNOT_OFFSET_PRIMARY = 0.075i
ANNOT_FONT_SECONDARY = Helvetica
ANNOT_FONT_SIZE_SECONDARY = 16p
ANNOT_OFFSET_SECONDARY = 0.075i
DEGREE_SYMBOL = ring
HEADER_FONT = Helvetica
HEADER_FONT_SIZE = 36p
HEADER_OFFSET = 0.1875i
LABEL_FONT = Helvetica
LABEL_FONT_SIZE = 14p
LABEL_OFFSET = 0.1125i
OBLIQUE_ANNOTATION = 1
PLOT_CLOCK_FORMAT = hh:mm:ss
PLOT_DATE_FORMAT = yyyy-mm-dd
PLOT_DEGREE_FORMAT = +ddd:mm:ss
Y_AXIS_TYPE = hor_text
#-------- Basemap Layout Parameters ---------
BASEMAP_AXES = WESN
BASEMAP_FRAME_RGB = 0/0/0
BASEMAP_TYPE = plain
FRAME_PEN = 1.25p
FRAME_WIDTH = 0.075i
GRID_CROSS_SIZE_PRIMARY = 0i
GRID_PEN_PRIMARY = 0.25p
GRID_CROSS_SIZE_SECONDARY = 0i
GRID_PEN_SECONDARY = 0.5p
MAP_SCALE_HEIGHT = 0.075i
POLAR_CAP = 85/90
TICK_LENGTH = 0.075i
TICK_PEN = 0.5p
X_AXIS_LENGTH = 9i
Y_AXIS_LENGTH = 6i
X_ORIGIN = 1i
Y_ORIGIN = 1i
UNIX_TIME = FALSE
UNIX_TIME_POS = BL/-0.75i/-0.75i
UNIX_TIME_FORMAT = %Y %b %d %H:%M:%S
#-------- Color System Parameters -----------
COLOR_BACKGROUND = 0/0/0
COLOR_FOREGROUND = 255/255/255
COLOR_NAN = 128/128/128
COLOR_IMAGE = adobe
COLOR_MODEL = rgb
HSV_MIN_SATURATION = 1
HSV_MAX_SATURATION = 0.1
HSV_MIN_VALUE = 0.3
HSV_MAX_VALUE = 1
#-------- PostScript Parameters -------------
CHAR_ENCODING = ISOLatin1+
DOTS_PR_INCH = 300
N_COPIES = 1
PS_COLOR = rgb
PS_IMAGE_COMPRESS = lzw
PS_IMAGE_FORMAT = ascii
PS_LINE_CAP = round
PS_LINE_JOIN = miter
PS_MITER_LIMIT = 35
PS_VERBOSE = FALSE
GLOBAL_X_SCALE = 1
GLOBAL_Y_SCALE = 1
#-------- I/O Format Parameters -------------
D_FORMAT = %lg
FIELD_DELIMITER = tab
GRIDFILE_SHORTHAND = FALSE
GRID_FORMAT = nf
INPUT_CLOCK_FORMAT = hh:mm:ss
INPUT_DATE_FORMAT = yyyy-mm-dd
IO_HEADER = FALSE
N_HEADER_RECS = 1
OUTPUT_CLOCK_FORMAT = hh:mm:ss
OUTPUT_DATE_FORMAT = yyyy-mm-dd
OUTPUT_DEGREE_FORMAT = +D
XY_TOGGLE = FALSE
#-------- Projection Parameters -------------
ELLIPSOID = WGS-84
MAP_SCALE_FACTOR = default
MEASURE_UNIT = inch
#-------- Calendar/Time Parameters ----------
TIME_FORMAT_PRIMARY = full
TIME_FORMAT_SECONDARY = full
TIME_EPOCH = 2000-01-01T00:00:00
TIME_IS_INTERVAL = OFF
TIME_INTERVAL_FRACTION = 0.5
TIME_LANGUAGE = us
TIME_UNIT = d
TIME_WEEK_START = Sunday
Y2K_OFFSET_YEAR = 1950
#-------- Miscellaneous Parameters ----------
HISTORY = TRUE
INTERPOLANT = akima
LINE_STEP = 0.01i
VECTOR_SHAPE = 0
VERBOSE = FALSE
'''
_gmt_defaults_by_version['4.5.2'] = r'''
#
# GMT-SYSTEM 4.5.2 [64-bit] Defaults file
#
#-------- Plot Media Parameters -------------
PAGE_COLOR = white
PAGE_ORIENTATION = portrait
PAPER_MEDIA = a4+
#-------- Basemap Annotation Parameters ------
ANNOT_MIN_ANGLE = 20
ANNOT_MIN_SPACING = 0
ANNOT_FONT_PRIMARY = Helvetica
ANNOT_FONT_SIZE_PRIMARY = 14p
ANNOT_OFFSET_PRIMARY = 0.075i
ANNOT_FONT_SECONDARY = Helvetica
ANNOT_FONT_SIZE_SECONDARY = 16p
ANNOT_OFFSET_SECONDARY = 0.075i
DEGREE_SYMBOL = ring
HEADER_FONT = Helvetica
HEADER_FONT_SIZE = 36p
HEADER_OFFSET = 0.1875i
LABEL_FONT = Helvetica
LABEL_FONT_SIZE = 14p
LABEL_OFFSET = 0.1125i
OBLIQUE_ANNOTATION = 1
PLOT_CLOCK_FORMAT = hh:mm:ss
PLOT_DATE_FORMAT = yyyy-mm-dd
PLOT_DEGREE_FORMAT = +ddd:mm:ss
Y_AXIS_TYPE = hor_text
#-------- Basemap Layout Parameters ---------
BASEMAP_AXES = WESN
BASEMAP_FRAME_RGB = black
BASEMAP_TYPE = plain
FRAME_PEN = 1.25p
FRAME_WIDTH = 0.075i
GRID_CROSS_SIZE_PRIMARY = 0i
GRID_PEN_PRIMARY = 0.25p
GRID_CROSS_SIZE_SECONDARY = 0i
GRID_PEN_SECONDARY = 0.5p
MAP_SCALE_HEIGHT = 0.075i
POLAR_CAP = 85/90
TICK_LENGTH = 0.075i
TICK_PEN = 0.5p
X_AXIS_LENGTH = 9i
Y_AXIS_LENGTH = 6i
X_ORIGIN = 1i
Y_ORIGIN = 1i
UNIX_TIME = FALSE
UNIX_TIME_POS = BL/-0.75i/-0.75i
UNIX_TIME_FORMAT = %Y %b %d %H:%M:%S
#-------- Color System Parameters -----------
COLOR_BACKGROUND = black
COLOR_FOREGROUND = white
COLOR_NAN = 128
COLOR_IMAGE = adobe
COLOR_MODEL = rgb
HSV_MIN_SATURATION = 1
HSV_MAX_SATURATION = 0.1
HSV_MIN_VALUE = 0.3
HSV_MAX_VALUE = 1
#-------- PostScript Parameters -------------
CHAR_ENCODING = ISOLatin1+
DOTS_PR_INCH = 300
GLOBAL_X_SCALE = 1
GLOBAL_Y_SCALE = 1
N_COPIES = 1
PS_COLOR = rgb
PS_IMAGE_COMPRESS = lzw
PS_IMAGE_FORMAT = ascii
PS_LINE_CAP = round
PS_LINE_JOIN = miter
PS_MITER_LIMIT = 35
PS_VERBOSE = FALSE
TRANSPARENCY = 0
#-------- I/O Format Parameters -------------
D_FORMAT = %.12lg
FIELD_DELIMITER = tab
GRIDFILE_FORMAT = nf
GRIDFILE_SHORTHAND = FALSE
INPUT_CLOCK_FORMAT = hh:mm:ss
INPUT_DATE_FORMAT = yyyy-mm-dd
IO_HEADER = FALSE
N_HEADER_RECS = 1
NAN_RECORDS = pass
OUTPUT_CLOCK_FORMAT = hh:mm:ss
OUTPUT_DATE_FORMAT = yyyy-mm-dd
OUTPUT_DEGREE_FORMAT = D
XY_TOGGLE = FALSE
#-------- Projection Parameters -------------
ELLIPSOID = WGS-84
MAP_SCALE_FACTOR = default
MEASURE_UNIT = inch
#-------- Calendar/Time Parameters ----------
TIME_FORMAT_PRIMARY = full
TIME_FORMAT_SECONDARY = full
TIME_EPOCH = 2000-01-01T00:00:00
TIME_IS_INTERVAL = OFF
TIME_INTERVAL_FRACTION = 0.5
TIME_LANGUAGE = us
TIME_UNIT = d
TIME_WEEK_START = Sunday
Y2K_OFFSET_YEAR = 1950
#-------- Miscellaneous Parameters ----------
HISTORY = TRUE
INTERPOLANT = akima
LINE_STEP = 0.01i
VECTOR_SHAPE = 0
VERBOSE = FALSE
'''
_gmt_defaults_by_version['4.5.3'] = r'''
#
# GMT-SYSTEM 4.5.3 (CVS Jun 18 2010 10:56:07) [64-bit] Defaults file
#
#-------- Plot Media Parameters -------------
PAGE_COLOR = white
PAGE_ORIENTATION = portrait
PAPER_MEDIA = a4+
#-------- Basemap Annotation Parameters ------
ANNOT_MIN_ANGLE = 20
ANNOT_MIN_SPACING = 0
ANNOT_FONT_PRIMARY = Helvetica
ANNOT_FONT_SIZE_PRIMARY = 14p
ANNOT_OFFSET_PRIMARY = 0.075i
ANNOT_FONT_SECONDARY = Helvetica
ANNOT_FONT_SIZE_SECONDARY = 16p
ANNOT_OFFSET_SECONDARY = 0.075i
DEGREE_SYMBOL = ring
HEADER_FONT = Helvetica
HEADER_FONT_SIZE = 36p
HEADER_OFFSET = 0.1875i
LABEL_FONT = Helvetica
LABEL_FONT_SIZE = 14p
LABEL_OFFSET = 0.1125i
OBLIQUE_ANNOTATION = 1
PLOT_CLOCK_FORMAT = hh:mm:ss
PLOT_DATE_FORMAT = yyyy-mm-dd
PLOT_DEGREE_FORMAT = +ddd:mm:ss
Y_AXIS_TYPE = hor_text
#-------- Basemap Layout Parameters ---------
BASEMAP_AXES = WESN
BASEMAP_FRAME_RGB = black
BASEMAP_TYPE = plain
FRAME_PEN = 1.25p
FRAME_WIDTH = 0.075i
GRID_CROSS_SIZE_PRIMARY = 0i
GRID_PEN_PRIMARY = 0.25p
GRID_CROSS_SIZE_SECONDARY = 0i
GRID_PEN_SECONDARY = 0.5p
MAP_SCALE_HEIGHT = 0.075i
POLAR_CAP = 85/90
TICK_LENGTH = 0.075i
TICK_PEN = 0.5p
X_AXIS_LENGTH = 9i
Y_AXIS_LENGTH = 6i
X_ORIGIN = 1i
Y_ORIGIN = 1i
UNIX_TIME = FALSE
UNIX_TIME_POS = BL/-0.75i/-0.75i
UNIX_TIME_FORMAT = %Y %b %d %H:%M:%S
#-------- Color System Parameters -----------
COLOR_BACKGROUND = black
COLOR_FOREGROUND = white
COLOR_NAN = 128
COLOR_IMAGE = adobe
COLOR_MODEL = rgb
HSV_MIN_SATURATION = 1
HSV_MAX_SATURATION = 0.1
HSV_MIN_VALUE = 0.3
HSV_MAX_VALUE = 1
#-------- PostScript Parameters -------------
CHAR_ENCODING = ISOLatin1+
DOTS_PR_INCH = 300
GLOBAL_X_SCALE = 1
GLOBAL_Y_SCALE = 1
N_COPIES = 1
PS_COLOR = rgb
PS_IMAGE_COMPRESS = lzw
PS_IMAGE_FORMAT = ascii
PS_LINE_CAP = round
PS_LINE_JOIN = miter
PS_MITER_LIMIT = 35
PS_VERBOSE = FALSE
TRANSPARENCY = 0
#-------- I/O Format Parameters -------------
D_FORMAT = %.12lg
FIELD_DELIMITER = tab
GRIDFILE_FORMAT = nf
GRIDFILE_SHORTHAND = FALSE
INPUT_CLOCK_FORMAT = hh:mm:ss
INPUT_DATE_FORMAT = yyyy-mm-dd
IO_HEADER = FALSE
N_HEADER_RECS = 1
NAN_RECORDS = pass
OUTPUT_CLOCK_FORMAT = hh:mm:ss
OUTPUT_DATE_FORMAT = yyyy-mm-dd
OUTPUT_DEGREE_FORMAT = D
XY_TOGGLE = FALSE
#-------- Projection Parameters -------------
ELLIPSOID = WGS-84
MAP_SCALE_FACTOR = default
MEASURE_UNIT = inch
#-------- Calendar/Time Parameters ----------
TIME_FORMAT_PRIMARY = full
TIME_FORMAT_SECONDARY = full
TIME_EPOCH = 2000-01-01T00:00:00
TIME_IS_INTERVAL = OFF
TIME_INTERVAL_FRACTION = 0.5
TIME_LANGUAGE = us
TIME_UNIT = d
TIME_WEEK_START = Sunday
Y2K_OFFSET_YEAR = 1950
#-------- Miscellaneous Parameters ----------
HISTORY = TRUE
INTERPOLANT = akima
LINE_STEP = 0.01i
VECTOR_SHAPE = 0
VERBOSE = FALSE
'''
_gmt_defaults_by_version['5.1.2'] = r'''
#
# GMT 5.1.2 Defaults file
# vim:sw=8:ts=8:sts=8
# $Revision: 13836 $
# $LastChangedDate: 2014-12-20 03:45:42 -1000 (Sat, 20 Dec 2014) $
#
# COLOR Parameters
#
COLOR_BACKGROUND = black
COLOR_FOREGROUND = white
COLOR_NAN = 127.5
COLOR_MODEL = none
COLOR_HSV_MIN_S = 1
COLOR_HSV_MAX_S = 0.1
COLOR_HSV_MIN_V = 0.3
COLOR_HSV_MAX_V = 1
#
# DIR Parameters
#
DIR_DATA =
DIR_DCW =
DIR_GSHHG =
#
# FONT Parameters
#
FONT_ANNOT_PRIMARY = 14p,Helvetica,black
FONT_ANNOT_SECONDARY = 16p,Helvetica,black
FONT_LABEL = 14p,Helvetica,black
FONT_LOGO = 8p,Helvetica,black
FONT_TITLE = 24p,Helvetica,black
#
# FORMAT Parameters
#
FORMAT_CLOCK_IN = hh:mm:ss
FORMAT_CLOCK_OUT = hh:mm:ss
FORMAT_CLOCK_MAP = hh:mm:ss
FORMAT_DATE_IN = yyyy-mm-dd
FORMAT_DATE_OUT = yyyy-mm-dd
FORMAT_DATE_MAP = yyyy-mm-dd
FORMAT_GEO_OUT = D
FORMAT_GEO_MAP = ddd:mm:ss
FORMAT_FLOAT_OUT = %.12g
FORMAT_FLOAT_MAP = %.12g
FORMAT_TIME_PRIMARY_MAP = full
FORMAT_TIME_SECONDARY_MAP = full
FORMAT_TIME_STAMP = %Y %b %d %H:%M:%S
#
# GMT Miscellaneous Parameters
#
GMT_COMPATIBILITY = 4
GMT_CUSTOM_LIBS =
GMT_EXTRAPOLATE_VAL = NaN
GMT_FFT = auto
GMT_HISTORY = true
GMT_INTERPOLANT = akima
GMT_TRIANGULATE = Shewchuk
GMT_VERBOSE = compat
GMT_LANGUAGE = us
#
# I/O Parameters
#
IO_COL_SEPARATOR = tab
IO_GRIDFILE_FORMAT = nf
IO_GRIDFILE_SHORTHAND = false
IO_HEADER = false
IO_N_HEADER_RECS = 0
IO_NAN_RECORDS = pass
IO_NC4_CHUNK_SIZE = auto
IO_NC4_DEFLATION_LEVEL = 3
IO_LONLAT_TOGGLE = false
IO_SEGMENT_MARKER = >
#
# MAP Parameters
#
MAP_ANNOT_MIN_ANGLE = 20
MAP_ANNOT_MIN_SPACING = 0p
MAP_ANNOT_OBLIQUE = 1
MAP_ANNOT_OFFSET_PRIMARY = 0.075i
MAP_ANNOT_OFFSET_SECONDARY = 0.075i
MAP_ANNOT_ORTHO = we
MAP_DEFAULT_PEN = default,black
MAP_DEGREE_SYMBOL = ring
MAP_FRAME_AXES = WESNZ
MAP_FRAME_PEN = thicker,black
MAP_FRAME_TYPE = fancy
MAP_FRAME_WIDTH = 5p
MAP_GRID_CROSS_SIZE_PRIMARY = 0p
MAP_GRID_CROSS_SIZE_SECONDARY = 0p
MAP_GRID_PEN_PRIMARY = default,black
MAP_GRID_PEN_SECONDARY = thinner,black
MAP_LABEL_OFFSET = 0.1944i
MAP_LINE_STEP = 0.75p
MAP_LOGO = false
MAP_LOGO_POS = BL/-54p/-54p
MAP_ORIGIN_X = 1i
MAP_ORIGIN_Y = 1i
MAP_POLAR_CAP = 85/90
MAP_SCALE_HEIGHT = 5p
MAP_TICK_LENGTH_PRIMARY = 5p/2.5p
MAP_TICK_LENGTH_SECONDARY = 15p/3.75p
MAP_TICK_PEN_PRIMARY = thinner,black
MAP_TICK_PEN_SECONDARY = thinner,black
MAP_TITLE_OFFSET = 14p
MAP_VECTOR_SHAPE = 0
#
# Projection Parameters
#
PROJ_AUX_LATITUDE = authalic
PROJ_ELLIPSOID = WGS-84
PROJ_LENGTH_UNIT = cm
PROJ_MEAN_RADIUS = authalic
PROJ_SCALE_FACTOR = default
#
# PostScript Parameters
#
PS_CHAR_ENCODING = ISOLatin1+
PS_COLOR_MODEL = rgb
PS_COMMENTS = false
PS_IMAGE_COMPRESS = deflate,5
PS_LINE_CAP = butt
PS_LINE_JOIN = miter
PS_MITER_LIMIT = 35
PS_MEDIA = a4
PS_PAGE_COLOR = white
PS_PAGE_ORIENTATION = portrait
PS_SCALE_X = 1
PS_SCALE_Y = 1
PS_TRANSPARENCY = Normal
#
# Calendar/Time Parameters
#
TIME_EPOCH = 1970-01-01T00:00:00
TIME_IS_INTERVAL = off
TIME_INTERVAL_FRACTION = 0.5
TIME_UNIT = s
TIME_WEEK_START = Monday
TIME_Y2K_OFFSET_YEAR = 1950
'''
def get_gmt_version(gmtdefaultsbinary, gmthomedir=None):
args = [gmtdefaultsbinary]
environ = os.environ.copy()
environ['GMTHOME'] = gmthomedir or ''
p = subprocess.Popen(
args,
stdout=subprocess.PIPE,
stderr=subprocess.PIPE,
env=environ)
(stdout, stderr) = p.communicate()
m = re.search(br'(\d+(\.\d+)*)', stderr) \
or re.search(br'# GMT (\d+(\.\d+)*)', stdout)
if not m:
raise GMTInstallationProblem(
"Can't extract version number from output of %s."
% gmtdefaultsbinary)
return str(m.group(1).decode('ascii'))
def detect_gmt_installations():
installations = {}
errmesses = []
# GMT 4.x:
try:
p = subprocess.Popen(
['GMT'],
stdout=subprocess.PIPE,
stderr=subprocess.PIPE)
(stdout, stderr) = p.communicate()
m = re.search(br'Version\s+(\d+(\.\d+)*)', stderr, re.M)
if not m:
raise GMTInstallationProblem(
"Can't get version number from output of GMT.")
version = str(m.group(1).decode('ascii'))
if version[0] != '5':
m = re.search(br'^\s+executables\s+(.+)$', stderr, re.M)
if not m:
raise GMTInstallationProblem(
"Can't extract executables dir from output of GMT.")
gmtbin = str(m.group(1).decode('ascii'))
m = re.search(br'^\s+shared data\s+(.+)$', stderr, re.M)
if not m:
raise GMTInstallationProblem(
"Can't extract shared dir from output of GMT.")
gmtshare = str(m.group(1).decode('ascii'))
if not gmtshare.endswith('/share'):
raise GMTInstallationProblem(
"Can't determine GMTHOME from output of GMT.")
gmthome = gmtshare[:-6]
installations[version] = {
'home': gmthome,
'bin': gmtbin}
except OSError as e:
errmesses.append(('GMT', str(e)))
try:
version = str(subprocess.check_output(
['gmt', '--version']).strip().decode('ascii')).split('_')[0]
gmtbin = str(subprocess.check_output(
['gmt', '--show-bindir']).strip().decode('ascii'))
installations[version] = {
'bin': gmtbin}
except (OSError, subprocess.CalledProcessError) as e:
errmesses.append(('gmt', str(e)))
if not installations:
s = []
for (progname, errmess) in errmesses:
s.append('Cannot start "%s" executable: %s' % (progname, errmess))
raise GMTInstallationProblem(', '.join(s))
return installations
def appropriate_defaults_version(version):
avails = sorted(_gmt_defaults_by_version.keys(), key=key_version)
for iavail, avail in enumerate(avails):
if key_version(version) == key_version(avail):
return version
elif key_version(version) < key_version(avail):
return avails[max(0, iavail-1)]
return avails[-1]
def gmt_default_config(version):
'''
Get default GMT configuration dict for given version.
'''
xversion = appropriate_defaults_version(version)
# if not version in _gmt_defaults_by_version:
# raise GMTError('No GMT defaults for version %s found' % version)
gmt_defaults = _gmt_defaults_by_version[xversion]
d = {}
for line in gmt_defaults.splitlines():
sline = line.strip()
if not sline or sline.startswith('#'):
continue
k, v = sline.split('=', 1)
d[k.strip()] = v.strip()
return d
def diff_defaults(v1, v2):
d1 = gmt_default_config(v1)
d2 = gmt_default_config(v2)
for k in d1:
if k not in d2:
print('%s not in %s' % (k, v2))
else:
if d1[k] != d2[k]:
print('%s %s = %s' % (v1, k, d1[k]))
print('%s %s = %s' % (v2, k, d2[k]))
for k in d2:
if k not in d1:
print('%s not in %s' % (k, v1))
# diff_defaults('4.5.2', '4.5.3')
def check_gmt_installation(installation):
home_dir = installation.get('home', None)
bin_dir = installation['bin']
version = installation['version']
for d in home_dir, bin_dir:
if d is not None:
if not os.path.exists(d):
logging.error(('Directory does not exist: %s\n'
'Check your GMT installation.') % d)
major_version = version.split('.')[0]
if major_version == '6':
raise GMTInstallationProblem(
'GMT version 6 not supported by pyrocko.gmtpy.')
if major_version != '5':
gmtdefaults = pjoin(bin_dir, 'gmtdefaults')
versionfound = get_gmt_version(gmtdefaults, home_dir)
if versionfound != version:
raise GMTInstallationProblem((
'Expected GMT version %s but found version %s.\n'
'(Looking at output of %s)') % (
version, versionfound, gmtdefaults))
def get_gmt_installation(version):
setup_gmt_installations()
if version != 'newest' and version not in _gmt_installations:
logging.warn('GMT version %s not installed, taking version %s instead'
% (version, newest_installed_gmt_version()))
version = 'newest'
if version == 'newest':
version = newest_installed_gmt_version()
installation = dict(_gmt_installations[version])
return installation
def setup_gmt_installations():
if not setup_gmt_installations.have_done:
if not _gmt_installations:
_gmt_installations.update(detect_gmt_installations())
# store defaults as dicts into the gmt installations dicts
for version, installation in _gmt_installations.items():
installation['defaults'] = gmt_default_config(version)
installation['version'] = version
for installation in _gmt_installations.values():
check_gmt_installation(installation)
setup_gmt_installations.have_done = True
setup_gmt_installations.have_done = False
_paper_sizes_a = '''A0 2380 3368
A1 1684 2380
A2 1190 1684
A3 842 1190
A4 595 842
A5 421 595
A6 297 421
A7 210 297
A8 148 210
A9 105 148
A10 74 105
B0 2836 4008
B1 2004 2836
B2 1418 2004
B3 1002 1418
B4 709 1002
B5 501 709
archA 648 864
archB 864 1296
archC 1296 1728
archD 1728 2592
archE 2592 3456
flsa 612 936
halfletter 396 612
note 540 720
letter 612 792
legal 612 1008
11x17 792 1224
ledger 1224 792'''
_paper_sizes = {}
def setup_paper_sizes():
if not _paper_sizes:
for line in _paper_sizes_a.splitlines():
k, w, h = line.split()
_paper_sizes[k.lower()] = float(w), float(h)
def get_paper_size(k):
setup_paper_sizes()
return _paper_sizes[k.lower().rstrip('+')]
def all_paper_sizes():
setup_paper_sizes()
return _paper_sizes
def measure_unit(gmt_config):
for k in ['MEASURE_UNIT', 'PROJ_LENGTH_UNIT']:
if k in gmt_config:
return gmt_config[k]
raise GmtPyError('cannot get measure unit / proj length unit from config')
def paper_media(gmt_config):
for k in ['PAPER_MEDIA', 'PS_MEDIA']:
if k in gmt_config:
return gmt_config[k]
raise GmtPyError('cannot get paper media from config')
def page_orientation(gmt_config):
for k in ['PAGE_ORIENTATION', 'PS_PAGE_ORIENTATION']:
if k in gmt_config:
return gmt_config[k]
raise GmtPyError('cannot get paper orientation from config')
def make_bbox(width, height, gmt_config, margins=(0.8, 0.8, 0.8, 0.8)):
leftmargin, topmargin, rightmargin, bottommargin = margins
portrait = page_orientation(gmt_config).lower() == 'portrait'
paper_size = get_paper_size(paper_media(gmt_config))
if not portrait:
paper_size = paper_size[1], paper_size[0]
xoffset = (paper_size[0] - (width + leftmargin + rightmargin)) / \
2.0 + leftmargin
yoffset = (paper_size[1] - (height + topmargin + bottommargin)) / \
2.0 + bottommargin
if portrait:
bb1 = int((xoffset - leftmargin))
bb2 = int((yoffset - bottommargin))
bb3 = bb1 + int((width+leftmargin+rightmargin))
bb4 = bb2 + int((height+topmargin+bottommargin))
else:
bb1 = int((yoffset - topmargin))
bb2 = int((xoffset - leftmargin))
bb3 = bb1 + int((height+topmargin+bottommargin))
bb4 = bb2 + int((width+leftmargin+rightmargin))
return xoffset, yoffset, (bb1, bb2, bb3, bb4)
def gmtdefaults_as_text(version='newest'):
'''
Get the built-in gmtdefaults.
'''
if version not in _gmt_installations:
logging.warn('GMT version %s not installed, taking version %s instead'
% (version, newest_installed_gmt_version()))
version = 'newest'
if version == 'newest':
version = newest_installed_gmt_version()
return _gmt_defaults_by_version[version]
[docs]def savegrd(x, y, z, filename, title=None, naming='xy'):
'''
Write COARDS compliant netcdf (grd) file.
'''
assert y.size, x.size == z.shape
ny, nx = z.shape
nc = netcdf.netcdf_file(filename, 'w')
assert naming in ('xy', 'lonlat')
if naming == 'xy':
kx, ky = 'x', 'y'
else:
kx, ky = 'lon', 'lat'
nc.node_offset = 0
if title is not None:
nc.title = title
nc.Conventions = 'COARDS/CF-1.0'
nc.createDimension(kx, nx)
nc.createDimension(ky, ny)
xvar = nc.createVariable(kx, 'd', (kx,))
yvar = nc.createVariable(ky, 'd', (ky,))
if naming == 'xy':
xvar.long_name = kx
yvar.long_name = ky
else:
xvar.long_name = 'longitude'
xvar.units = 'degrees_east'
yvar.long_name = 'latitude'
yvar.units = 'degrees_north'
zvar = nc.createVariable('z', 'd', (ky, kx))
xvar[:] = x.astype(num.float64)
yvar[:] = y.astype(num.float64)
zvar[:] = z.astype(num.float64)
nc.close()
def to_array(var):
arr = var[:].copy()
if hasattr(var, 'scale_factor'):
arr *= var.scale_factor
if hasattr(var, 'add_offset'):
arr += var.add_offset
return arr
[docs]def loadgrd(filename):
'''
Read COARDS compliant netcdf (grd) file.
'''
nc = netcdf.netcdf_file(filename, 'r')
vkeys = list(nc.variables.keys())
kx = 'x'
ky = 'y'
if 'lon' in vkeys:
kx = 'lon'
if 'lat' in vkeys:
ky = 'lat'
kz = 'z'
if 'altitude' in vkeys:
kz = 'altitude'
x = to_array(nc.variables[kx])
y = to_array(nc.variables[ky])
z = to_array(nc.variables[kz])
nc.close()
return x, y, z
def centers_to_edges(asorted):
return (asorted[1:] + asorted[:-1])/2.
def nvals(asorted):
eps = (asorted[-1]-asorted[0])/asorted.size
return num.sum(asorted[1:] - asorted[:-1] >= eps) + 1
def guess_vals(asorted):
eps = (asorted[-1]-asorted[0])/asorted.size
indis = num.nonzero(asorted[1:] - asorted[:-1] >= eps)[0]
indis = num.concatenate((num.array([0]), indis+1,
num.array([asorted.size])))
asum = num.zeros(asorted.size+1)
asum[1:] = num.cumsum(asorted)
return (asum[indis[1:]] - asum[indis[:-1]]) / (indis[1:]-indis[:-1])
def blockmean(asorted, b):
indis = num.nonzero(asorted[1:] - asorted[:-1])[0]
indis = num.concatenate((num.array([0]), indis+1,
num.array([asorted.size])))
bsum = num.zeros(b.size+1)
bsum[1:] = num.cumsum(b)
return (
asorted[indis[:-1]],
(bsum[indis[1:]] - bsum[indis[:-1]]) / (indis[1:]-indis[:-1]))
def griddata_regular(x, y, z, xvals, yvals):
nx, ny = xvals.size, yvals.size
xindi = num.digitize(x, centers_to_edges(xvals))
yindi = num.digitize(y, centers_to_edges(yvals))
zindi = yindi*nx+xindi
order = num.argsort(zindi)
z = z[order]
zindi = zindi[order]
zindi, z = blockmean(zindi, z)
znew = num.empty(nx*ny, dtype=float)
znew[:] = num.nan
znew[zindi] = z
return znew.reshape(ny, nx)
def guess_field_size(x_sorted, y_sorted, z=None, mode=None):
critical_fraction = 1./num.e - 0.014*3
xs = x_sorted
ys = y_sorted
nxs, nys = nvals(xs), nvals(ys)
if mode == 'nonrandom':
return nxs, nys, 0
elif xs.size == nxs*nys:
# exact match
return nxs, nys, 0
elif nxs >= xs.size*critical_fraction and nys >= xs.size*critical_fraction:
# possibly randomly sampled
nxs = int(math.sqrt(xs.size))
nys = nxs
return nxs, nys, 2
else:
return nxs, nys, 1
def griddata_auto(x, y, z, mode=None):
'''
Grid tabular XYZ data by binning.
This function does some extra work to guess the size of the grid. This
should work fine if the input values are already defined on an rectilinear
grid, even if data points are missing or duplicated. This routine also
tries to detect a random distribution of input data and in that case
creates a grid of size sqrt(N) x sqrt(N).
The points do not have to be given in any particular order. Grid nodes
without data are assigned the NaN value. If multiple data points map to the
same grid node, their average is assigned to the grid node.
'''
x, y, z = [num.asarray(X) for X in (x, y, z)]
assert x.size == y.size == z.size
xs, ys = num.sort(x), num.sort(y)
nx, ny, badness = guess_field_size(xs, ys, z, mode=mode)
if badness <= 1:
xf = guess_vals(xs)
yf = guess_vals(ys)
zf = griddata_regular(x, y, z, xf, yf)
else:
xf = num.linspace(xs[0], xs[-1], nx)
yf = num.linspace(ys[0], ys[-1], ny)
zf = griddata_regular(x, y, z, xf, yf)
return xf, yf, zf
def tabledata(xf, yf, zf):
assert yf.size, xf.size == zf.shape
x = num.tile(xf, yf.size)
y = num.repeat(yf, xf.size)
z = zf.flatten()
return x, y, z
def double1d(a):
a2 = num.empty(a.size*2-1)
a2[::2] = a
a2[1::2] = (a[:-1] + a[1:])/2.
return a2
def double2d(f):
f2 = num.empty((f.shape[0]*2-1, f.shape[1]*2-1))
f2[:, :] = num.nan
f2[::2, ::2] = f
f2[1::2, ::2] = (f[:-1, :] + f[1:, :])/2.
f2[::2, 1::2] = (f[:, :-1] + f[:, 1:])/2.
f2[1::2, 1::2] = (f[:-1, :-1] + f[1:, :-1] + f[:-1, 1:] + f[1:, 1:])/4.
diag = f2[1::2, 1::2]
diagA = (f[:-1, :-1] + f[1:, 1:]) / 2.
diagB = (f[1:, :-1] + f[:-1, 1:]) / 2.
f2[1::2, 1::2] = num.where(num.isnan(diag), diagA, diag)
f2[1::2, 1::2] = num.where(num.isnan(diag), diagB, diag)
return f2
def doublegrid(x, y, z):
x2 = double1d(x)
y2 = double1d(y)
z2 = double2d(z)
return x2, y2, z2
[docs]class Guru(object):
'''
Abstract base class providing template interpolation, accessible as
attributes.
Classes deriving from this one, have to implement a :py:meth:`get_params`
method, which is called to get a dict to do ordinary
``"%(key)x"``-substitutions. The deriving class must also provide a dict
with the templates.
'''
def __init__(self):
self.templates = {}
def fill(self, templates, **kwargs):
params = self.get_params(**kwargs)
strings = [t % params for t in templates]
return strings
# hand through templates dict
def __getitem__(self, template_name):
return self.templates[template_name]
def __setitem__(self, template_name, template):
self.templates[template_name] = template
def __contains__(self, template_name):
return template_name in self.templates
def __iter__(self):
return iter(self.templates)
def __len__(self):
return len(self.templates)
def __delitem__(self, template_name):
del(self.templates[template_name])
def _simple_fill(self, template_names, **kwargs):
templates = [self.templates[n] for n in template_names]
return self.fill(templates, **kwargs)
def __getattr__(self, template_names):
if [n for n in template_names if n not in self.templates]:
raise AttributeError(template_names)
def f(**kwargs):
return self._simple_fill(template_names, **kwargs)
return f
def nice_value(x):
'''
Round ``x`` to nice value.
'''
exp = 1.0
sign = 1
if x < 0.0:
x = -x
sign = -1
while x >= 1.0:
x /= 10.0
exp *= 10.0
while x < 0.1:
x *= 10.0
exp /= 10.0
if x >= 0.75:
return sign * 1.0 * exp
if x >= 0.375:
return sign * 0.5 * exp
if x >= 0.225:
return sign * 0.25 * exp
if x >= 0.15:
return sign * 0.2 * exp
return sign * 0.1 * exp
[docs]class AutoScaler(object):
'''
Tunable 1D autoscaling based on data range.
Instances of this class may be used to determine nice minima, maxima and
increments for ax annotations, as well as suitable common exponents for
notation.
The autoscaling process is guided by the following public attributes:
.. py:attribute:: approx_ticks
Approximate number of increment steps (tickmarks) to generate.
.. py:attribute:: mode
Mode of operation: one of ``'auto'``, ``'min-max'``, ``'0-max'``,
``'min-0'``, ``'symmetric'`` or ``'off'``.
================ ==================================================
mode description
================ ==================================================
``'auto'``: Look at data range and choose one of the choices
below.
``'min-max'``: Output range is selected to include data range.
``'0-max'``: Output range shall start at zero and end at data
max.
``'min-0'``: Output range shall start at data min and end at
zero.
``'symmetric'``: Output range shall by symmetric by zero.
``'off'``: Similar to ``'min-max'``, but snap and space are
disabled, such that the output range always
exactly matches the data range.
================ ==================================================
.. py:attribute:: exp
If defined, override automatically determined exponent for notation
by the given value.
.. py:attribute:: snap
If set to True, snap output range to multiples of increment. This
parameter has no effect, if mode is set to ``'off'``.
.. py:attribute:: inc
If defined, override automatically determined tick increment by the
given value.
.. py:attribute:: space
Add some padding to the range. The value given, is the fraction by
which the output range is increased on each side. If mode is
``'0-max'`` or ``'min-0'``, the end at zero is kept fixed at zero.
This parameter has no effect if mode is set to ``'off'``.
.. py:attribute:: exp_factor
Exponent of notation is chosen to be a multiple of this value.
.. py:attribute:: no_exp_interval:
Range of exponent, for which no exponential notation is allowed.
'''
def __init__(
self,
approx_ticks=7.0,
mode='auto',
exp=None,
snap=False,
inc=None,
space=0.0,
exp_factor=3,
no_exp_interval=(-3, 5)):
'''
Create new AutoScaler instance.
The parameters are described in the AutoScaler documentation.
'''
self.approx_ticks = approx_ticks
self.mode = mode
self.exp = exp
self.snap = snap
self.inc = inc
self.space = space
self.exp_factor = exp_factor
self.no_exp_interval = no_exp_interval
[docs] def make_scale(self, data_range, override_mode=None):
'''
Get nice minimum, maximum and increment for given data range.
Returns ``(minimum, maximum, increment)`` or ``(maximum, minimum,
-increment)``, depending on whether data_range is ``(data_min,
data_max)`` or ``(data_max, data_min)``. If ``override_mode`` is
defined, the mode attribute is temporarily overridden by the given
value.
'''
data_min = min(data_range)
data_max = max(data_range)
is_reverse = (data_range[0] > data_range[1])
a = self.mode
if self.mode == 'auto':
a = self.guess_autoscale_mode(data_min, data_max)
if override_mode is not None:
a = override_mode
mi, ma = 0, 0
if a == 'off':
mi, ma = data_min, data_max
elif a == '0-max':
mi = 0.0
if data_max > 0.0:
ma = data_max
else:
ma = 1.0
elif a == 'min-0':
ma = 0.0
if data_min < 0.0:
mi = data_min
else:
mi = -1.0
elif a == 'min-max':
mi, ma = data_min, data_max
elif a == 'symmetric':
m = max(abs(data_min), abs(data_max))
mi = -m
ma = m
nmi = mi
if (mi != 0. or a == 'min-max') and a != 'off':
nmi = mi - self.space*(ma-mi)
nma = ma
if (ma != 0. or a == 'min-max') and a != 'off':
nma = ma + self.space*(ma-mi)
mi, ma = nmi, nma
if mi == ma and a != 'off':
mi -= 1.0
ma += 1.0
# make nice tick increment
if self.inc is not None:
inc = self.inc
else:
if self.approx_ticks > 0.:
inc = nice_value((ma-mi) / self.approx_ticks)
else:
inc = nice_value((ma-mi)*10.)
if inc == 0.0:
inc = 1.0
# snap min and max to ticks if this is wanted
if self.snap and a != 'off':
ma = inc * math.ceil(ma/inc)
mi = inc * math.floor(mi/inc)
if is_reverse:
return ma, mi, -inc
else:
return mi, ma, inc
[docs] def make_exp(self, x):
'''
Get nice exponent for notation of ``x``.
For ax annotations, give tick increment as ``x``.
'''
if self.exp is not None:
return self.exp
x = abs(x)
if x == 0.0:
return 0
if 10**self.no_exp_interval[0] <= x <= 10**self.no_exp_interval[1]:
return 0
return math.floor(math.log10(x)/self.exp_factor)*self.exp_factor
[docs] def guess_autoscale_mode(self, data_min, data_max):
'''
Guess mode of operation, based on data range.
Used to map ``'auto'`` mode to ``'0-max'``, ``'min-0'``, ``'min-max'``
or ``'symmetric'``.
'''
a = 'min-max'
if data_min >= 0.0:
if data_min < data_max/2.:
a = '0-max'
else:
a = 'min-max'
if data_max <= 0.0:
if data_max > data_min/2.:
a = 'min-0'
else:
a = 'min-max'
if data_min < 0.0 and data_max > 0.0:
if abs((abs(data_max)-abs(data_min)) /
(abs(data_max)+abs(data_min))) < 0.5:
a = 'symmetric'
else:
a = 'min-max'
return a
[docs]class Ax(AutoScaler):
'''
Ax description with autoscaling capabilities.
The ax is described by the :py:class:`AutoScaler` public attributes, plus
the following additional attributes (with default values given in
paranthesis):
.. py:attribute:: label
Ax label (without unit).
.. py:attribute:: unit
Physical unit of the data attached to this ax.
.. py:attribute:: scaled_unit
(see below)
.. py:attribute:: scaled_unit_factor
Scaled physical unit and factor between unit and scaled_unit so that
unit = scaled_unit_factor x scaled_unit.
(E.g. if unit is 'm' and data is in the range of nanometers, you may
want to set the scaled_unit to 'nm' and the scaled_unit_factor to
1e9.)
.. py:attribute:: limits
If defined, fix range of ax to limits=(min,max).
.. py:attribute:: masking
If true and if there is a limit on the ax, while calculating ranges,
the data points are masked such that data points outside of this axes
limits are not used to determine the range of another dependant ax.
'''
def __init__(self, label='', unit='', scaled_unit_factor=1.,
scaled_unit='', limits=None, masking=True, **kwargs):
AutoScaler.__init__(self, **kwargs)
self.label = label
self.unit = unit
self.scaled_unit_factor = scaled_unit_factor
self.scaled_unit = scaled_unit
self.limits = limits
self.masking = masking
[docs] def label_str(self, exp, unit):
'''
Get label string including the unit and multiplier.
'''
slabel, sunit, sexp = '', '', ''
if self.label:
slabel = self.label
if unit or exp != 0:
if exp != 0:
sexp = '\\327 10@+%i@+' % exp
sunit = '[ %s %s ]' % (sexp, unit)
else:
sunit = '[ %s ]' % unit
p = []
if slabel:
p.append(slabel)
if sunit:
p.append(sunit)
return ' '.join(p)
[docs] def make_params(self, data_range, ax_projection=False, override_mode=None,
override_scaled_unit_factor=None):
'''
Get minimum, maximum, increment and label string for ax display.'
Returns minimum, maximum, increment and label string including unit and
multiplier for given data range.
If ``ax_projection`` is True, values suitable to be displayed on the ax
are returned, e.g. min, max and inc are returned in scaled units.
Otherwise the values are returned in the original units, without any
scaling applied.
'''
sf = self.scaled_unit_factor
if override_scaled_unit_factor is not None:
sf = override_scaled_unit_factor
dr_scaled = [sf*x for x in data_range]
mi, ma, inc = self.make_scale(dr_scaled, override_mode=override_mode)
if self.inc is not None:
inc = self.inc*sf
if ax_projection:
exp = self.make_exp(inc)
if sf == 1. and override_scaled_unit_factor is None:
unit = self.unit
else:
unit = self.scaled_unit
label = self.label_str(exp, unit)
return mi/10**exp, ma/10**exp, inc/10**exp, label
else:
label = self.label_str(0, self.unit)
return mi/sf, ma/sf, inc/sf, label
[docs]class ScaleGuru(Guru):
'''
2D/3D autoscaling and ax annotation facility.
Instances of this class provide automatic determination of plot ranges,
tick increments and scaled annotations, as well as label/unit handling. It
can in particular be used to automatically generate the -R and -B option
arguments, which are required for most GMT commands.
It extends the functionality of the :py:class:`Ax` and
:py:class:`AutoScaler` classes at the level, where it can not be handled
anymore by looking at a single dimension of the dataset's data, e.g.:
* The ability to impose a fixed aspect ratio between two axes.
* Recalculation of data range on non-limited axes, when there are
limits imposed on other axes.
'''
def __init__(self, data_tuples=None, axes=None, aspect=None,
percent_interval=None, copy_from=None):
Guru.__init__(self)
if copy_from:
self.templates = copy.deepcopy(copy_from.templates)
self.axes = copy.deepcopy(copy_from.axes)
self.data_ranges = copy.deepcopy(copy_from.data_ranges)
self.aspect = copy_from.aspect
if percent_interval is not None:
from scipy.stats import scoreatpercentile as scap
self.templates = dict(
R='-R%(xmin)g/%(xmax)g/%(ymin)g/%(ymax)g',
B='-B%(xinc)g:%(xlabel)s:/%(yinc)g:%(ylabel)s:WSen',
T='-T%(zmin)g/%(zmax)g/%(zinc)g')
maxdim = 2
if data_tuples:
maxdim = max(maxdim, max([len(dt) for dt in data_tuples]))
else:
if axes:
maxdim = len(axes)
data_tuples = [([],) * maxdim]
if axes is not None:
self.axes = axes
else:
self.axes = [Ax() for i in range(maxdim)]
# sophisticated data-range calculation
data_ranges = [None] * maxdim
for dt_ in data_tuples:
dt = num.asarray(dt_)
in_range = True
for ax, x in zip(self.axes, dt):
if ax.limits and ax.masking:
ax_limits = list(ax.limits)
if ax_limits[0] is None:
ax_limits[0] = -num.inf
if ax_limits[1] is None:
ax_limits[1] = num.inf
in_range = num.logical_and(
in_range,
num.logical_and(ax_limits[0] <= x, x <= ax_limits[1]))
for i, ax, x in zip(range(maxdim), self.axes, dt):
if not ax.limits or None in ax.limits:
if len(x) >= 1:
if in_range is not True:
xmasked = num.where(in_range, x, num.NaN)
if percent_interval is None:
range_this = (
num.nanmin(xmasked),
num.nanmax(xmasked))
else:
xmasked_finite = num.compress(
num.isfinite(xmasked), xmasked)
range_this = (
scap(xmasked_finite,
(100.-percent_interval)/2.),
scap(xmasked_finite,
100.-(100.-percent_interval)/2.))
else:
if percent_interval is None:
range_this = num.nanmin(x), num.nanmax(x)
else:
xmasked_finite = num.compress(
num.isfinite(xmasked), xmasked)
range_this = (
scap(xmasked_finite,
(100.-percent_interval)/2.),
scap(xmasked_finite,
100.-(100.-percent_interval)/2.))
else:
range_this = (0., 1.)
if ax.limits:
if ax.limits[0] is not None:
range_this = ax.limits[0], max(ax.limits[0],
range_this[1])
if ax.limits[1] is not None:
range_this = min(ax.limits[1],
range_this[0]), ax.limits[1]
else:
range_this = ax.limits
if data_ranges[i] is None and range_this[0] <= range_this[1]:
data_ranges[i] = range_this
else:
mi, ma = range_this
if data_ranges[i] is not None:
mi = min(data_ranges[i][0], mi)
ma = max(data_ranges[i][1], ma)
data_ranges[i] = (mi, ma)
for i in range(len(data_ranges)):
if data_ranges[i] is None or not (
num.isfinite(data_ranges[i][0])
and num.isfinite(data_ranges[i][1])):
data_ranges[i] = (0., 1.)
self.data_ranges = data_ranges
self.aspect = aspect
def copy(self):
return ScaleGuru(copy_from=self)
[docs] def get_params(self, ax_projection=False):
'''
Get dict with output parameters.
For each data dimension, ax minimum, maximum, increment and a label
string (including unit and exponential factor) are determined. E.g. in
for the first dimension the output dict will contain the keys
``'xmin'``, ``'xmax'``, ``'xinc'``, and ``'xlabel'``.
Normally, values corresponding to the scaling of the raw data are
produced, but if ``ax_projection`` is ``True``, values which are
suitable to be printed on the axes are returned. This means that in the
latter case, the :py:attr:`Ax.scaled_unit` and
:py:attr:`Ax.scaled_unit_factor` attributes as set on the axes are
respected and that a common 10^x factor is factored out and put to the
label string.
'''
xmi, xma, xinc, xlabel = self.axes[0].make_params(
self.data_ranges[0], ax_projection)
ymi, yma, yinc, ylabel = self.axes[1].make_params(
self.data_ranges[1], ax_projection)
if len(self.axes) > 2:
zmi, zma, zinc, zlabel = self.axes[2].make_params(
self.data_ranges[2], ax_projection)
# enforce certain aspect, if needed
if self.aspect is not None:
xwid = xma-xmi
ywid = yma-ymi
if ywid < xwid*self.aspect:
ymi -= (xwid*self.aspect - ywid)*0.5
yma += (xwid*self.aspect - ywid)*0.5
ymi, yma, yinc, ylabel = self.axes[1].make_params(
(ymi, yma), ax_projection, override_mode='off',
override_scaled_unit_factor=1.)
elif xwid < ywid/self.aspect:
xmi -= (ywid/self.aspect - xwid)*0.5
xma += (ywid/self.aspect - xwid)*0.5
xmi, xma, xinc, xlabel = self.axes[0].make_params(
(xmi, xma), ax_projection, override_mode='off',
override_scaled_unit_factor=1.)
params = dict(xmin=xmi, xmax=xma, xinc=xinc, xlabel=xlabel,
ymin=ymi, ymax=yma, yinc=yinc, ylabel=ylabel)
if len(self.axes) > 2:
params.update(dict(zmin=zmi, zmax=zma, zinc=zinc, zlabel=zlabel))
return params
class GumSpring(object):
'''
Sizing policy implementing a minimal size, plus a desire to grow.
'''
def __init__(self, minimal=None, grow=None):
self.minimal = minimal
if grow is None:
if minimal is None:
self.grow = 1.0
else:
self.grow = 0.0
else:
self.grow = grow
self.value = 1.0
def get_minimal(self):
if self.minimal is not None:
return self.minimal
else:
return 0.0
def get_grow(self):
return self.grow
def set_value(self, value):
self.value = value
def get_value(self):
return self.value
def distribute(sizes, grows, space):
sizes = list(sizes)
gsum = sum(grows)
if gsum > 0.0:
for i in range(len(sizes)):
sizes[i] += space*grows[i]/gsum
return sizes
[docs]class CenterLayout(Widget):
'''
A layout manager which centers its single child widget.
The child widget may be oversized.
'''
def __init__(self, horizontal=None, vertical=None):
Widget.__init__(self, horizontal, vertical)
self.content = Widget(horizontal=GumSpring(grow=1.),
vertical=GumSpring(grow=1.), parent=self)
[docs] def get_min_size(self):
shs, svs = Widget.get_min_size(self)
sh, sv = self.content.get_min_size()
return max(shs, sh), max(svs, sv)
[docs] def get_grow(self):
ghs, gvs = Widget.get_grow(self)
gh, gv = self.content.get_grow()
return gh*ghs, gv*gvs
[docs] def set_size(self, size, offset):
(sh, sv), (oh, ov) = self.legalize(size, offset)
shc, svc = self.content.get_min_size()
ghc, gvc = self.content.get_grow()
if ghc != 0.:
shc = sh
if gvc != 0.:
svc = sv
ohc = oh+(sh-shc)/2.
ovc = ov+(sv-svc)/2.
self.content.set_size((shc, svc), (ohc, ovc))
Widget.set_size(self, (sh, sv), (oh, ov))
def get_widget(self):
return self.content
[docs] def get_children(self):
return [self.content]
[docs]class FrameLayout(Widget):
'''
A layout manager containing a center widget sorrounded by four margin
widgets.
::
+---------------------------+
| top |
+---------------------------+
| | | |
| left | center | right |
| | | |
+---------------------------+
| bottom |
+---------------------------+
This layout manager does a little bit of extra effort to maintain the
aspect constraint of the center widget, if this is set. It does so, by
allowing for a bit more flexibility in the sizing of the margins. Two
shortcut methods are provided to set the margin sizes in one shot:
:py:meth:`set_fixed_margins` and :py:meth:`set_min_margins`. The first sets
the margins to fixed sizes, while the second gives them a minimal size and
a (neglectably) small desire to grow. Using the latter may be useful when
setting an aspect constraint on the center widget, because this way the
maximum size of the center widget may be controlled without creating empty
spaces between the widgets.
'''
def __init__(self, horizontal=None, vertical=None):
Widget.__init__(self, horizontal, vertical)
mw = 3.*cm
self.left = Widget(
horizontal=GumSpring(grow=0.15, minimal=mw), parent=self)
self.right = Widget(
horizontal=GumSpring(grow=0.15, minimal=mw), parent=self)
self.top = Widget(
vertical=GumSpring(grow=0.15, minimal=mw/golden_ratio),
parent=self)
self.bottom = Widget(
vertical=GumSpring(grow=0.15, minimal=mw/golden_ratio),
parent=self)
self.center = Widget(
horizontal=GumSpring(grow=0.7), vertical=GumSpring(grow=0.7),
parent=self)
[docs] def set_fixed_margins(self, left, right, top, bottom):
'''
Give margins fixed size constraints.
'''
self.left.set_horizontal(left, 0)
self.right.set_horizontal(right, 0)
self.top.set_vertical(top, 0)
self.bottom.set_vertical(bottom, 0)
[docs] def set_min_margins(self, left, right, top, bottom, grow=0.0001):
'''
Give margins a minimal size and the possibility to grow.
The desire to grow is set to a very small number.
'''
self.left.set_horizontal(left, grow)
self.right.set_horizontal(right, grow)
self.top.set_vertical(top, grow)
self.bottom.set_vertical(bottom, grow)
[docs] def get_min_size(self):
shs, svs = Widget.get_min_size(self)
sl, sr, st, sb, sc = [x.get_min_size() for x in (
self.left, self.right, self.top, self.bottom, self.center)]
gl, gr, gt, gb, gc = [x.get_grow() for x in (
self.left, self.right, self.top, self.bottom, self.center)]
shsum = sl[0]+sr[0]+sc[0]
svsum = st[1]+sb[1]+sc[1]
# prevent widgets from collapsing
for s, g in ((sl, gl), (sr, gr), (sc, gc)):
if s[0] == 0.0 and g[0] != 0.0:
shsum += 0.1*cm
for s, g in ((st, gt), (sb, gb), (sc, gc)):
if s[1] == 0.0 and g[1] != 0.0:
svsum += 0.1*cm
sh = max(shs, shsum)
sv = max(svs, svsum)
return sh, sv
[docs] def get_grow(self):
ghs, gvs = Widget.get_grow(self)
gh = (self.left.get_grow()[0] +
self.right.get_grow()[0] +
self.center.get_grow()[0]) * ghs
gv = (self.top.get_grow()[1] +
self.bottom.get_grow()[1] +
self.center.get_grow()[1]) * gvs
return gh, gv
[docs] def set_size(self, size, offset):
(sh, sv), (oh, ov) = self.legalize(size, offset)
sl, sr, st, sb, sc = [x.get_min_size() for x in (
self.left, self.right, self.top, self.bottom, self.center)]
gl, gr, gt, gb, gc = [x.get_grow() for x in (
self.left, self.right, self.top, self.bottom, self.center)]
ah = sh - (sl[0]+sr[0]+sc[0])
av = sv - (st[1]+sb[1]+sc[1])
if ah < 0.0:
raise GmtPyError("Container not wide enough for contents "
"(FrameLayout, available: %g cm, needed: %g cm)"
% (sh/cm, (sl[0]+sr[0]+sc[0])/cm))
if av < 0.0:
raise GmtPyError("Container not high enough for contents "
"(FrameLayout, available: %g cm, needed: %g cm)"
% (sv/cm, (st[1]+sb[1]+sc[1])/cm))
slh, srh, sch = distribute((sl[0], sr[0], sc[0]),
(gl[0], gr[0], gc[0]), ah)
stv, sbv, scv = distribute((st[1], sb[1], sc[1]),
(gt[1], gb[1], gc[1]), av)
if self.center.aspect is not None:
ahm = sh - (sl[0]+sr[0] + scv/self.center.aspect)
avm = sv - (st[1]+sb[1] + sch*self.center.aspect)
if 0.0 < ahm < ah:
slh, srh, sch = distribute(
(sl[0], sr[0], scv/self.center.aspect),
(gl[0], gr[0], 0.0), ahm)
elif 0.0 < avm < av:
stv, sbv, scv = distribute((st[1], sb[1],
sch*self.center.aspect),
(gt[1], gb[1], 0.0), avm)
ah = sh - (slh+srh+sch)
av = sv - (stv+sbv+scv)
oh += ah/2.
ov += av/2.
sh -= ah
sv -= av
self.left.set_size((slh, scv), (oh, ov+sbv))
self.right.set_size((srh, scv), (oh+slh+sch, ov+sbv))
self.top.set_size((sh, stv), (oh, ov+sbv+scv))
self.bottom.set_size((sh, sbv), (oh, ov))
self.center.set_size((sch, scv), (oh+slh, ov+sbv))
Widget.set_size(self, (sh, sv), (oh, ov))
[docs] def get_children(self):
return [self.left, self.right, self.top, self.bottom, self.center]
[docs]class GridLayout(Widget):
'''
A layout manager which arranges its sub-widgets in a grid.
The grid spacing is flexible and based on the sizing policies of the
contained sub-widgets. If an equidistant grid is needed, the sizing
policies of the sub-widgets have to be set equally.
The height of each row and the width of each column is derived from the
sizing policy of the largest sub-widget in the row or column in question.
The algorithm is not very sophisticated, so conflicting sizing policies
might not be resolved optimally.
'''
def __init__(self, nx=2, ny=2, horizontal=None, vertical=None):
'''
Create new grid layout with ``nx`` columns and ``ny`` rows.
'''
Widget.__init__(self, horizontal, vertical)
self.grid = []
for iy in range(ny):
row = []
for ix in range(nx):
w = Widget(parent=self)
row.append(w)
self.grid.append(row)
def sub_min_sizes_as_array(self):
esh = num.array(
[[w.get_min_size()[0] for w in row] for row in self.grid],
dtype=float)
esv = num.array(
[[w.get_min_size()[1] for w in row] for row in self.grid],
dtype=float)
return esh, esv
def sub_grows_as_array(self):
egh = num.array(
[[w.get_grow()[0] for w in row] for row in self.grid],
dtype=float)
egv = num.array(
[[w.get_grow()[1] for w in row] for row in self.grid],
dtype=float)
return egh, egv
[docs] def get_min_size(self):
sh, sv = Widget.get_min_size(self)
esh, esv = self.sub_min_sizes_as_array()
if esh.size != 0:
sh = max(sh, num.sum(esh.max(0)))
if esv.size != 0:
sv = max(sv, num.sum(esv.max(1)))
return sh, sv
[docs] def get_grow(self):
ghs, gvs = Widget.get_grow(self)
egh, egv = self.sub_grows_as_array()
if egh.size != 0:
gh = num.sum(egh.max(0))*ghs
else:
gh = 1.0
if egv.size != 0:
gv = num.sum(egv.max(1))*gvs
else:
gv = 1.0
return gh, gv
[docs] def set_size(self, size, offset):
(sh, sv), (oh, ov) = self.legalize(size, offset)
esh, esv = self.sub_min_sizes_as_array()
egh, egv = self.sub_grows_as_array()
# available additional space
empty = esh.size == 0
if not empty:
ah = sh - num.sum(esh.max(0))
av = sv - num.sum(esv.max(1))
else:
av = sv
ah = sh
if ah < 0.0:
raise GmtPyError("Container not wide enough for contents "
"(GridLayout, available: %g cm, needed: %g cm)"
% (sh/cm, (num.sum(esh.max(0)))/cm))
if av < 0.0:
raise GmtPyError("Container not high enough for contents "
"(GridLayout, available: %g cm, needed: %g cm)"
% (sv/cm, (num.sum(esv.max(1)))/cm))
nx, ny = esh.shape
if not empty:
# distribute additional space on rows and columns
# according to grow weights and minimal sizes
gsh = egh.sum(1)[:, num.newaxis].repeat(ny, axis=1)
nesh = esh.copy()
nesh += num.where(gsh > 0.0, ah*egh/gsh, 0.0)
nsh = num.maximum(nesh.max(0), esh.max(0))
gsv = egv.sum(0)[num.newaxis, :].repeat(nx, axis=0)
nesv = esv.copy()
nesv += num.where(gsv > 0.0, av*egv/gsv, 0.0)
nsv = num.maximum(nesv.max(1), esv.max(1))
ah = sh - sum(nsh)
av = sv - sum(nsv)
oh += ah/2.
ov += av/2.
sh -= ah
sv -= av
# resize child widgets
neov = ov + sum(nsv)
for row, nesv in zip(self.grid, nsv):
neov -= nesv
neoh = oh
for w, nesh in zip(row, nsh):
w.set_size((nesh, nesv), (neoh, neov))
neoh += nesh
Widget.set_size(self, (sh, sv), (oh, ov))
[docs] def get_children(self):
children = []
for row in self.grid:
children.extend(row)
return children
def is_gmt5(version='newest'):
return get_gmt_installation(version)['version'][0] == '5'
def aspect_for_projection(gmtversion, *args, **kwargs):
gmt = GMT(version=gmtversion, eps_mode=True)
if gmt.is_gmt5():
gmt.psbasemap('-B+gblack', finish=True, *args, **kwargs)
fn = gmt.tempfilename('test.eps')
gmt.save(fn, crop_eps_mode=True)
with open(fn, 'rb') as f:
s = f.read()
l, b, r, t = get_bbox(s)
else:
gmt.psbasemap('-G0', finish=True, *args, **kwargs)
l, b, r, t = gmt.bbox()
return (t-b)/(r-l)
def text_box(
text, font=0, font_size=12., angle=0, gmtversion='newest', **kwargs):
gmt = GMT(version=gmtversion)
if gmt.is_gmt5():
row = [0, 0, text]
farg = ['-F+f%gp,%s,%s+j%s' % (font_size, font, 'black', 'BL')]
else:
row = [0, 0, font_size, 0, font, 'BL', text]
farg = []
gmt.pstext(
in_rows=[row],
finish=True,
R=(0, 1, 0, 1),
J='x10p',
N=True,
*farg,
**kwargs)
fn = gmt.tempfilename() + '.ps'
gmt.save(fn)
(_, stderr) = subprocess.Popen(
['gs', '-q', '-dNOPAUSE', '-dBATCH', '-r720', '-sDEVICE=bbox', fn],
stderr=subprocess.PIPE).communicate()
dx, dy = None, None
for line in stderr.splitlines():
if line.startswith(b'%%HiResBoundingBox:'):
l, b, r, t = [float(x) for x in line.split()[-4:]]
dx, dy = r-l, t-b
break
return dx, dy
class TableLiner(object):
'''
Utility class to turn tables into lines.
'''
def __init__(self, in_columns=None, in_rows=None, encoding='utf-8'):
self.in_columns = in_columns
self.in_rows = in_rows
self.encoding = encoding
def __iter__(self):
if self.in_columns is not None:
for row in zip(*self.in_columns):
yield (' '.join([newstr(x) for x in row])+'\n').encode(
self.encoding)
if self.in_rows is not None:
for row in self.in_rows:
yield (' '.join([newstr(x) for x in row])+'\n').encode(
self.encoding)
class LineStreamChopper(object):
'''
File-like object to buffer data.
'''
def __init__(self, liner):
self.chopsize = None
self.liner = liner
self.chop_iterator = None
self.closed = False
def _chopiter(self):
buf = BytesIO()
for line in self.liner:
buf.write(line)
buflen = buf.tell()
if self.chopsize is not None and buflen >= self.chopsize:
buf.seek(0)
while buf.tell() <= buflen-self.chopsize:
yield buf.read(self.chopsize)
newbuf = BytesIO()
newbuf.write(buf.read())
buf.close()
buf = newbuf
yield(buf.getvalue())
buf.close()
def read(self, size=None):
if self.closed:
raise ValueError('Cannot read from closed LineStreamChopper.')
if self.chop_iterator is None:
self.chopsize = size
self.chop_iterator = self._chopiter()
self.chopsize = size
try:
return next(self.chop_iterator)
except StopIteration:
return ''
def close(self):
self.chopsize = None
self.chop_iterator = None
self.closed = True
def flush(self):
pass
font_tab = {
0: 'Helvetica',
1: 'Helvetica-Bold',
}
font_tab_rev = dict((v, k) for (k, v) in font_tab.items())
[docs]class GMT(object):
'''
A thin wrapper to GMT command execution.
A dict ``config`` may be given to override some of the default GMT
parameters. The ``version`` argument may be used to select a specific GMT
version, which should be used with this GMT instance. The selected
version of GMT has to be installed on the system, must be supported by
gmtpy and gmtpy must know where to find it.
Each instance of this class is used for the task of producing one PS or PDF
output file.
Output of a series of GMT commands is accumulated in memory and can then be
saved as PS or PDF file using the :py:meth:`save` method.
GMT commands are accessed as method calls to instances of this class. See
the :py:meth:`__getattr__` method for details on how the method's
arguments are translated into options and arguments for the GMT command.
Associated with each instance of this class, a temporary directory is
created, where temporary files may be created, and which is automatically
deleted, when the object is destroyed. The :py:meth:`tempfilename` method
may be used to get a random filename in the instance's temporary directory.
Any .gmtdefaults files are ignored. The GMT class uses a fixed
set of defaults, which may be altered via an argument to the constructor.
If possible, GMT is run in 'isolation mode', which was introduced with GMT
version 4.2.2, by setting `GMT_TMPDIR` to the instance's temporary
directory. With earlier versions of GMT, problems may arise with parallel
execution of more than one GMT instance.
Each instance of the GMT class may pick a specific version of GMT which
shall be used, so that, if multiple versions of GMT are installed on the
system, different versions of GMT can be used simultaneously such that
backward compatibility of the scripts can be maintained.
'''
def __init__(
self,
config=None,
kontinue=None,
version='newest',
config_papersize=None,
eps_mode=False):
self.installation = get_gmt_installation(version)
self.gmt_config = dict(self.installation['defaults'])
self.eps_mode = eps_mode
self._shutil = shutil
if config:
self.gmt_config.update(config)
if config_papersize:
if not isinstance(config_papersize, str):
config_papersize = 'Custom_%ix%i' % (
int(config_papersize[0]), int(config_papersize[1]))
if self.is_gmt5():
self.gmt_config['PS_MEDIA'] = config_papersize
else:
self.gmt_config['PAPER_MEDIA'] = config_papersize
self.tempdir = tempfile.mkdtemp("", "gmtpy-")
self.gmt_config_filename = pjoin(self.tempdir, 'gmt.conf')
self.gen_gmt_config_file(self.gmt_config_filename, self.gmt_config)
if kontinue is not None:
self.load_unfinished(kontinue)
self.needstart = False
else:
self.output = BytesIO()
self.needstart = True
self.finished = False
self.environ = os.environ.copy()
self.environ['GMTHOME'] = self.installation.get('home', '')
# GMT isolation mode: works only properly with GMT version >= 4.2.2
self.environ['GMT_TMPDIR'] = self.tempdir
self.layout = None
self.command_log = []
self.keep_temp_dir = False
def is_gmt5(self):
return self.installation['version'][0] == '5'
def get_version(self):
return self.installation['version']
def get_config(self, key):
return self.gmt_config[key]
def to_points(self, string):
if not string:
return 0
unit = string[-1]
if unit in _units:
return float(string[:-1])/_units[unit]
else:
default_unit = measure_unit(self.gmt_config).lower()[0]
return float(string)/_units[default_unit]
def label_font_size(self):
if self.is_gmt5():
return self.to_points(self.gmt_config['FONT_LABEL'].split(',')[0])
else:
return self.to_points(self.gmt_config['LABEL_FONT_SIZE'])
def label_font(self):
if self.is_gmt5():
return font_tab_rev(self.gmt_config['FONT_LABEL'].split(',')[1])
else:
return self.gmt_config['LABEL_FONT']
def gen_gmt_config_file(self, config_filename, config):
f = open(config_filename, 'wb')
f.write(
('#\n# GMT %s Defaults file\n'
% self.installation['version']).encode('ascii'))
for k, v in config.items():
f.write(('%s = %s\n' % (k, v)).encode('ascii'))
f.close()
def __del__(self):
if not self.keep_temp_dir:
self._shutil.rmtree(self.tempdir)
def _gmtcommand(self, command, *addargs, **kwargs):
'''
Execute arbitrary GMT command.
See docstring in __getattr__ for details.
'''
in_stream = kwargs.pop('in_stream', None)
in_filename = kwargs.pop('in_filename', None)
in_string = kwargs.pop('in_string', None)
in_columns = kwargs.pop('in_columns', None)
in_rows = kwargs.pop('in_rows', None)
out_stream = kwargs.pop('out_stream', None)
out_filename = kwargs.pop('out_filename', None)
out_discard = kwargs.pop('out_discard', None)
finish = kwargs.pop('finish', False)
suppressdefaults = kwargs.pop('suppress_defaults', False)
config_override = kwargs.pop('config', None)
assert(not self.finished)
# check for mutual exclusiveness on input and output possibilities
assert(1 >= len(
[x for x in [
in_stream, in_filename, in_string, in_columns, in_rows]
if x is not None]))
assert(1 >= len([x for x in [out_stream, out_filename, out_discard]
if x is not None]))
options = []
gmt_config = self.gmt_config
if not self.is_gmt5():
gmt_config_filename = self.gmt_config_filename
if config_override:
gmt_config = self.gmt_config.copy()
gmt_config.update(config_override)
gmt_config_override_filename = pjoin(
self.tempdir, 'gmtdefaults_override')
self.gen_gmt_config_file(
gmt_config_override_filename, gmt_config)
gmt_config_filename = gmt_config_override_filename
else: # gmt5 needs override variables as --VAR=value
if config_override:
for k, v in config_override.items():
options.append('--%s=%s' % (k, v))
if out_discard:
out_filename = '/dev/null'
out_mustclose = False
if out_filename is not None:
out_mustclose = True
out_stream = open(out_filename, 'wb')
if in_filename is not None:
in_stream = open(in_filename, 'rb')
if in_string is not None:
in_stream = BytesIO(in_string)
encoding_gmt = gmt_config.get(
'PS_CHAR_ENCODING',
gmt_config.get('CHAR_ENCODING', 'ISOLatin1+'))
encoding = encoding_gmt_to_python[encoding_gmt.lower()]
if in_columns is not None or in_rows is not None:
in_stream = LineStreamChopper(TableLiner(in_columns=in_columns,
in_rows=in_rows,
encoding=encoding))
# convert option arguments to strings
for k, v in kwargs.items():
if len(k) > 1:
raise GmtPyError('Found illegal keyword argument "%s" '
'while preparing options for command "%s"'
% (k, command))
if type(v) is bool:
if v:
options.append('-%s' % k)
elif type(v) is tuple or type(v) is list:
options.append('-%s' % k + '/'.join([str(x) for x in v]))
else:
options.append('-%s%s' % (k, str(v)))
# if not redirecting to an external sink, handle -K -O
if out_stream is None:
if not finish:
options.append('-K')
else:
self.finished = True
if not self.needstart:
options.append('-O')
else:
self.needstart = False
out_stream = self.output
# run the command
if self.is_gmt5():
args = [pjoin(self.installation['bin'], 'gmt'), command]
else:
args = [pjoin(self.installation['bin'], command)]
if not os.path.isfile(args[0]):
raise OSError('No such file: %s' % args[0])
args.extend(options)
args.extend(addargs)
if not self.is_gmt5() and not suppressdefaults:
# does not seem to work with GMT 5 (and should not be necessary
args.append('+'+gmt_config_filename)
bs = 2048
p = subprocess.Popen(args, stdin=subprocess.PIPE,
stdout=subprocess.PIPE, bufsize=bs,
env=self.environ)
while True:
cr, cw, cx = select([p.stdout], [p.stdin], [])
if cr:
out_stream.write(p.stdout.read(bs))
if cw:
if in_stream is not None:
data = in_stream.read(bs)
if len(data) == 0:
break
p.stdin.write(data)
else:
break
if not cr and not cw:
break
p.stdin.close()
while True:
data = p.stdout.read(bs)
if len(data) == 0:
break
out_stream.write(data)
p.stdout.close()
retcode = p.wait()
if in_stream is not None:
in_stream.close()
if out_mustclose:
out_stream.close()
if retcode != 0:
self.keep_temp_dir = True
raise GMTError('Command %s returned an error. '
'While executing command:\n%s'
% (command, escape_shell_args(args)))
self.command_log.append(args)
[docs] def __getattr__(self, command):
'''
Maps to call self._gmtcommand(command, \\*addargs, \\*\\*kwargs).
Execute arbitrary GMT command.
Run a GMT command and by default append its postscript output to the
output file maintained by the GMT instance on which this method is
called.
Except for a few keyword arguments listed below, any ``kwargs`` and
``addargs`` are converted into command line options and arguments and
passed to the GMT command. Numbers in keyword arguments are converted
into strings. E.g. ``S=10`` is translated into ``'-S10'``. Tuples of
numbers or strings are converted into strings where the elements of the
tuples are separated by slashes '/'. E.g. ``R=(10, 10, 20, 20)`` is
translated into ``'-R10/10/20/20'``. Options with a boolean argument
are only appended to the GMT command, if their values are True.
If no output redirection is in effect, the -K and -O options are
handled by gmtpy and thus should not be specified. Use
``out_discard=True`` if you don't want -K or -O beeing added, but are
not interested in the output.
The standard input of the GMT process is fed by data selected with one
of the following ``in_*`` keyword arguments:
=============== =======================================================
``in_stream`` Data is read from an open file like object.
``in_filename`` Data is read from the given file.
``in_string`` String content is dumped to the process.
``in_columns`` A 2D nested iterable whose elements can be accessed as
``in_columns[icolumn][irow]`` is converted into an
ascii
table, which is fed to the process.
``in_rows`` A 2D nested iterable whos elements can be accessed as
``in_rows[irow][icolumn]`` is converted into an ascii
table, which is fed to the process.
=============== =======================================================
The standard output of the GMT process may be redirected by one of the
following options:
================= =====================================================
``out_stream`` Output is fed to an open file like object.
``out_filename`` Output is dumped to the given file.
``out_discard`` If True, output is dumped to :file:`/dev/null`.
================= =====================================================
Additional keyword arguments:
===================== =================================================
``config`` Dict with GMT defaults which override the
currently active set of defaults exclusively
during this call.
``finish`` If True, the postscript file, which is maintained
by the GMT instance is finished, and no further
plotting is allowed.
``suppress_defaults`` Suppress appending of the ``'+gmtdefaults'``
option to the command.
===================== =================================================
'''
def f(*args, **kwargs):
return self._gmtcommand(command, *args, **kwargs)
return f
[docs] def tempfilename(self, name=None):
'''
Get filename for temporary file in the private temp directory.
If no ``name`` argument is given, a random name is picked. If
``name`` is given, returns a path ending in that ``name``.
'''
if not name:
name = ''.join(
[random.choice('abcdefghijklmnopqrstuvwxyz')
for i in range(10)])
fn = pjoin(self.tempdir, name)
return fn
[docs] def tempfile(self, name=None):
'''
Create and open a file in the private temp directory.
'''
fn = self.tempfilename(name)
f = open(fn, 'wb')
return f, fn
def save_unfinished(self, filename):
out = open(filename, 'wb')
out.write(self.output.getvalue())
out.close()
def load_unfinished(self, filename):
self.output = BytesIO()
self.finished = False
inp = open(filename, 'rb')
self.output.write(inp.read())
inp.close()
def dump(self, ident):
filename = self.tempfilename('breakpoint-%s' % ident)
self.save_unfinished(filename)
def load(self, ident):
filename = self.tempfilename('breakpoint-%s' % ident)
self.load_unfinished(filename)
[docs] def save(self, filename=None, bbox=None, resolution=150, oversample=2.,
width=None, height=None, size=None, crop_eps_mode=False,
psconvert=False):
'''
Finish and save figure as PDF, PS or PPM file.
If filename ends with ``'.pdf'`` a PDF file is created by piping the
GMT output through :program:`gmtpy-epstopdf`.
If filename ends with ``'.png'`` a PNG file is created by running
:program:`gmtpy-epstopdf`, :program:`pdftocairo` and
:program:`convert`. ``resolution`` specifies the resolution in DPI for
raster file formats. Rasterization is done at a higher resolution if
``oversample`` is set to a value higher than one. The output image size
can also be controlled by setting ``width``, ``height`` or ``size``
instead of ``resolution``. When ``size`` is given, the image is scaled
so that ``max(width, height) == size``.
The bounding box is set according to the values given in ``bbox``.
'''
if not self.finished:
self.psxy(R=True, J=True, finish=True)
if filename:
tempfn = pjoin(self.tempdir, 'incomplete')
out = open(tempfn, 'wb')
else:
out = sys.stdout
if bbox and not self.is_gmt5():
out.write(replace_bbox(bbox, self.output.getvalue()))
else:
out.write(self.output.getvalue())
if filename:
out.close()
if filename.endswith('.ps') or (
not self.is_gmt5() and filename.endswith('.eps')):
shutil.move(tempfn, filename)
return
if self.is_gmt5():
if crop_eps_mode:
addarg = ['-A']
else:
addarg = []
subprocess.call(
[pjoin(self.installation['bin'], 'gmt'), 'psconvert',
'-Te', '-F%s' % tempfn + '.eps', tempfn, ] + addarg)
if bbox:
with open(tempfn + '.eps', 'rb') as fin:
with open(tempfn + '-fixbb.eps', 'wb') as fout:
replace_bbox(bbox, fin, fout)
shutil.move(tempfn + '-fixbb.eps', tempfn + '.eps')
else:
shutil.move(tempfn, tempfn + '.eps')
if filename.endswith('.eps'):
shutil.move(tempfn + '.eps', filename)
return
elif filename.endswith('.pdf'):
if psconvert:
gmt_bin = pjoin(self.installation['bin'], 'gmt')
subprocess.call([gmt_bin, 'psconvert', tempfn + '.eps', '-Tf',
'-F' + filename])
else:
subprocess.call(['gmtpy-epstopdf', '--res=%i' % resolution,
'--outfile=' + filename, tempfn + '.eps'])
else:
subprocess.call([
'gmtpy-epstopdf',
'--res=%i' % (resolution * oversample),
'--outfile=' + tempfn + '.pdf', tempfn + '.eps'])
convert_graph(
tempfn + '.pdf', filename,
resolution=resolution, oversample=oversample,
size=size, width=width, height=height)
def bbox(self):
return get_bbox(self.output.getvalue())
[docs] def get_command_log(self):
'''
Get the command log.
'''
return self.command_log
def __str__(self):
s = ''
for com in self.command_log:
s += com[0] + "\n " + "\n ".join(com[1:]) + "\n\n"
return s
[docs] def page_size_points(self):
'''
Try to get paper size of output postscript file in points.
'''
pm = paper_media(self.gmt_config).lower()
if pm.endswith('+') or pm.endswith('-'):
pm = pm[:-1]
orient = page_orientation(self.gmt_config).lower()
if pm in all_paper_sizes():
if orient == 'portrait':
return get_paper_size(pm)
else:
return get_paper_size(pm)[1], get_paper_size(pm)[0]
m = re.match(r'custom_([0-9.]+)([cimp]?)x([0-9.]+)([cimp]?)', pm)
if m:
w, uw, h, uh = m.groups()
w, h = float(w), float(h)
if uw:
w *= _units[uw]
if uh:
h *= _units[uh]
if orient == 'portrait':
return w, h
else:
return h, w
return None, None
[docs] def default_layout(self, with_palette=False):
'''
Get a default layout for the output page.
One of three different layouts is choosen, depending on the
`PAPER_MEDIA` setting in the GMT configuration dict.
If `PAPER_MEDIA` ends with a ``'+'`` (EPS output is selected), a
:py:class:`FrameLayout` is centered on the page, whose size is
controlled by its center widget's size plus the margins of the
:py:class:`FrameLayout`.
If `PAPER_MEDIA` indicates, that a custom page size is wanted by
starting with ``'Custom_'``, a :py:class:`FrameLayout` is used to fill
the complete page. The center widget's size is then controlled by the
page's size minus the margins of the :py:class:`FrameLayout`.
In any other case, two FrameLayouts are nested, such that the outer
layout attaches a 1 cm (printer) margin around the complete page, and
the inner FrameLayout's center widget takes up as much space as
possible under the constraint, that an aspect ratio of 1/golden_ratio
is preserved.
In any case, a reference to the innermost :py:class:`FrameLayout`
instance is returned. The top-level layout can be accessed by calling
:py:meth:`Widget.get_parent` on the returned layout.
'''
if self.layout is None:
w, h = self.page_size_points()
if w is None or h is None:
raise GmtPyError("Can't determine page size for layout")
pm = paper_media(self.gmt_config).lower()
if with_palette:
palette_layout = GridLayout(3, 1)
spacer = palette_layout.get_widget(1, 0)
palette_widget = palette_layout.get_widget(2, 0)
spacer.set_horizontal(0.5*cm)
palette_widget.set_horizontal(0.5*cm)
if pm.endswith('+') or self.eps_mode:
outer = CenterLayout()
outer.set_policy((w, h), (0., 0.))
inner = FrameLayout()
outer.set_widget(inner)
if with_palette:
inner.set_widget('center', palette_layout)
widget = palette_layout
else:
widget = inner.get_widget('center')
widget.set_policy((w/golden_ratio, 0.), (0., 0.),
aspect=1./golden_ratio)
mw = 3.0*cm
inner.set_fixed_margins(
mw, mw, mw/golden_ratio, mw/golden_ratio)
self.layout = inner
elif pm.startswith('custom_'):
layout = FrameLayout()
layout.set_policy((w, h), (0., 0.))
mw = 3.0*cm
layout.set_min_margins(
mw, mw, mw/golden_ratio, mw/golden_ratio)
if with_palette:
layout.set_widget('center', palette_layout)
self.layout = layout
else:
outer = FrameLayout()
outer.set_policy((w, h), (0., 0.))
outer.set_fixed_margins(1.*cm, 1.*cm, 1.*cm, 1.*cm)
inner = FrameLayout()
outer.set_widget('center', inner)
mw = 3.0*cm
inner.set_min_margins(mw, mw, mw/golden_ratio, mw/golden_ratio)
if with_palette:
inner.set_widget('center', palette_layout)
widget = palette_layout
else:
widget = inner.get_widget('center')
widget.set_aspect(1./golden_ratio)
self.layout = inner
return self.layout
[docs] def draw_layout(self, layout):
'''
Use psxy to draw layout; for debugging
'''
# corners = layout.get_corners(descend=True)
rects = num.array(layout.get_sizes(), dtype=float)
rects_wid = rects[:, 0, 0]
rects_hei = rects[:, 0, 1]
rects_center_x = rects[:, 1, 0] + rects_wid*0.5
rects_center_y = rects[:, 1, 1] + rects_hei*0.5
nrects = len(rects)
prects = (rects_center_x, rects_center_y, num.arange(nrects),
num.zeros(nrects), rects_hei, rects_wid)
# points = num.array(corners, dtype=float)
cptfile = self.tempfilename() + '.cpt'
self.makecpt(
C='ocean',
T='%g/%g/%g' % (-nrects, nrects, 1),
Z=True,
out_filename=cptfile, suppress_defaults=True)
bb = layout.bbox()
self.psxy(
in_columns=prects,
C=cptfile,
W='1p',
S='J',
R=(bb[0], bb[2], bb[1], bb[3]),
*layout.XYJ())
def simpleconf_to_ax(conf, axname):
c = {}
x = axname
for x in ('', axname):
for k in ('label', 'unit', 'scaled_unit', 'scaled_unit_factor',
'space', 'mode', 'approx_ticks', 'limits', 'masking', 'inc',
'snap'):
if x+k in conf:
c[k] = conf[x+k]
return Ax(**c)
class DensityPlotDef(object):
def __init__(self, data, cpt='ocean', tension=0.7, size=(640, 480),
contour=False, method='surface', zscaler=None, **extra):
self.data = data
self.cpt = cpt
self.tension = tension
self.size = size
self.contour = contour
self.method = method
self.zscaler = zscaler
self.extra = extra
class TextDef(object):
def __init__(
self,
data,
size=9,
justify='MC',
fontno=0,
offset=(0, 0),
color='black'):
self.data = data
self.size = size
self.justify = justify
self.fontno = fontno
self.offset = offset
self.color = color
class Simple(object):
def __init__(self, gmtconfig=None, gmtversion='newest', **simple_config):
self.data = []
self.symbols = []
self.config = copy.deepcopy(simple_config)
self.gmtconfig = gmtconfig
self.density_plot_defs = []
self.text_defs = []
self.gmtversion = gmtversion
self.data_x = []
self.symbols_x = []
self.data_y = []
self.symbols_y = []
self.default_config = {}
self.set_defaults(width=15.*cm,
height=15.*cm / golden_ratio,
margins=(2.*cm, 2.*cm, 2.*cm, 2.*cm),
with_palette=False,
palette_offset=0.5*cm,
palette_width=None,
palette_height=None,
zlabeloffset=2*cm,
draw_layout=False)
self.setup_defaults()
self.fixate_widget_aspect = False
def setup_defaults(self):
pass
def set_defaults(self, **kwargs):
self.default_config.update(kwargs)
def plot(self, data, symbol=''):
self.data.append(data)
self.symbols.append(symbol)
def density_plot(self, data, **kwargs):
dpd = DensityPlotDef(data, **kwargs)
self.density_plot_defs.append(dpd)
def text(self, data, **kwargs):
dpd = TextDef(data, **kwargs)
self.text_defs.append(dpd)
def plot_x(self, data, symbol=''):
self.data_x.append(data)
self.symbols_x.append(symbol)
def plot_y(self, data, symbol=''):
self.data_y.append(data)
self.symbols_y.append(symbol)
def set(self, **kwargs):
self.config.update(kwargs)
def setup_base(self, conf):
w = conf.pop('width')
h = conf.pop('height')
margins = conf.pop('margins')
gmtconfig = {}
if self.gmtconfig is not None:
gmtconfig.update(self.gmtconfig)
gmt = GMT(
version=self.gmtversion,
config=gmtconfig,
config_papersize='Custom_%ix%i' % (w, h))
layout = gmt.default_layout(with_palette=conf['with_palette'])
layout.set_min_margins(*margins)
if conf['with_palette']:
widget = layout.get_widget().get_widget(0, 0)
spacer = layout.get_widget().get_widget(1, 0)
spacer.set_horizontal(conf['palette_offset'])
palette_widget = layout.get_widget().get_widget(2, 0)
if conf['palette_width'] is not None:
palette_widget.set_horizontal(conf['palette_width'])
if conf['palette_height'] is not None:
palette_widget.set_vertical(conf['palette_height'])
widget.set_vertical(h-margins[2]-margins[3]-0.03*cm)
return gmt, layout, widget, palette_widget
else:
widget = layout.get_widget()
return gmt, layout, widget, None
def setup_projection(self, widget, scaler, conf):
pass
def setup_scaling(self, conf):
ndims = 2
if self.density_plot_defs:
ndims = 3
axes = [simpleconf_to_ax(conf, x) for x in 'xyz'[:ndims]]
data_all = []
data_all.extend(self.data)
for dsd in self.density_plot_defs:
if dsd.zscaler is None:
data_all.append(dsd.data)
else:
data_all.append(dsd.data[:2])
data_chopped = [ds[:ndims] for ds in data_all]
scaler = ScaleGuru(data_chopped, axes=axes[:ndims])
self.setup_scaling_plus(scaler, axes[:ndims])
return scaler
def setup_scaling_plus(self, scaler, axes):
pass
def setup_scaling_extra(self, scaler, conf):
scaler_x = scaler.copy()
scaler_x.data_ranges[1] = (0., 1.)
scaler_x.axes[1].mode = 'off'
scaler_y = scaler.copy()
scaler_y.data_ranges[0] = (0., 1.)
scaler_y.axes[0].mode = 'off'
return scaler_x, scaler_y
def draw_density(self, gmt, widget, scaler):
R = scaler.R()
# par = scaler.get_params()
rxyj = R + widget.XYJ()
innerticks = False
for dpd in self.density_plot_defs:
fn_cpt = gmt.tempfilename() + '.cpt'
if dpd.zscaler is not None:
s = dpd.zscaler
else:
s = scaler
gmt.makecpt(C=dpd.cpt, out_filename=fn_cpt, *s.T())
fn_grid = gmt.tempfilename()
fn_mean = gmt.tempfilename()
if dpd.method in ('surface', 'triangulate'):
gmt.blockmean(in_columns=dpd.data,
I='%i+/%i+' % dpd.size, # noqa
out_filename=fn_mean, *R)
if dpd.method == 'surface':
gmt.surface(
in_filename=fn_mean,
T=dpd.tension,
G=fn_grid,
I='%i+/%i+' % dpd.size, # noqa
out_discard=True,
*R)
if dpd.method == 'triangulate':
gmt.triangulate(
in_filename=fn_mean,
G=fn_grid,
I='%i+/%i+' % dpd.size, # noqa
out_discard=True,
V=True,
*R)
if gmt.is_gmt5():
gmt.grdimage(fn_grid, C=fn_cpt, E='i', n='l', *rxyj)
else:
gmt.grdimage(fn_grid, C=fn_cpt, E='i', S='l', *rxyj)
if dpd.contour:
gmt.grdcontour(fn_grid, C=fn_cpt, W='0.5p,black', *rxyj)
innerticks = '0.5p,black'
os.remove(fn_grid)
os.remove(fn_mean)
if dpd.method == 'fillcontour':
extra = dict(C=fn_cpt)
extra.update(dpd.extra)
gmt.pscontour(in_columns=dpd.data,
I=True, *rxyj, **extra) # noqa
if dpd.method == 'contour':
extra = dict(W='0.5p,black', C=fn_cpt)
extra.update(dpd.extra)
gmt.pscontour(in_columns=dpd.data, *rxyj, **extra)
return fn_cpt, innerticks
def draw_basemap(self, gmt, widget, scaler):
gmt.psbasemap(*(widget.JXY() + scaler.RB(ax_projection=True)))
def draw(self, gmt, widget, scaler):
rxyj = scaler.R() + widget.JXY()
for dat, sym in zip(self.data, self.symbols):
gmt.psxy(in_columns=dat, *(sym.split()+rxyj))
def post_draw(self, gmt, widget, scaler):
pass
def pre_draw(self, gmt, widget, scaler):
pass
def draw_extra(self, gmt, widget, scaler_x, scaler_y):
for dat, sym in zip(self.data_x, self.symbols_x):
gmt.psxy(in_columns=dat,
*(sym.split() + scaler_x.R() + widget.JXY()))
for dat, sym in zip(self.data_y, self.symbols_y):
gmt.psxy(in_columns=dat,
*(sym.split() + scaler_y.R() + widget.JXY()))
def draw_text(self, gmt, widget, scaler):
rxyj = scaler.R() + widget.JXY()
for td in self.text_defs:
x, y = td.data[0:2]
text = td.data[-1]
size = td.size
angle = 0
fontno = td.fontno
justify = td.justify
color = td.color
if gmt.is_gmt5():
gmt.pstext(
in_rows=[(x, y, text)],
F='+f%gp,%s,%s+a%g+j%s' % (
size, fontno, color, angle, justify),
D='%gp/%gp' % td.offset, *rxyj)
else:
gmt.pstext(
in_rows=[(x, y, size, angle, fontno, justify, text)],
D='%gp/%gp' % td.offset, *rxyj)
def save(self, filename, resolution=150):
conf = dict(self.default_config)
conf.update(self.config)
gmt, layout, widget, palette_widget = self.setup_base(conf)
scaler = self.setup_scaling(conf)
scaler_x, scaler_y = self.setup_scaling_extra(scaler, conf)
self.setup_projection(widget, scaler, conf)
if self.fixate_widget_aspect:
aspect = aspect_for_projection(
gmt.installation['version'], *(widget.J() + scaler.R()))
widget.set_aspect(aspect)
if conf['draw_layout']:
gmt.draw_layout(layout)
cptfile = None
if self.density_plot_defs:
cptfile, innerticks = self.draw_density(gmt, widget, scaler)
self.pre_draw(gmt, widget, scaler)
self.draw(gmt, widget, scaler)
self.post_draw(gmt, widget, scaler)
self.draw_extra(gmt, widget, scaler_x, scaler_y)
self.draw_text(gmt, widget, scaler)
self.draw_basemap(gmt, widget, scaler)
if palette_widget and cptfile:
nice_palette(gmt, palette_widget, scaler, cptfile,
innerticks=innerticks,
zlabeloffset=conf['zlabeloffset'])
gmt.save(filename, resolution=resolution)
class LinLinPlot(Simple):
pass
class LogLinPlot(Simple):
def setup_defaults(self):
self.set_defaults(xmode='min-max')
def setup_projection(self, widget, scaler, conf):
widget['J'] = '-JX%(width)gpl/%(height)gp'
scaler['B'] = '-B2:%(xlabel)s:/%(yinc)g:%(ylabel)s:WSen'
class LinLogPlot(Simple):
def setup_defaults(self):
self.set_defaults(ymode='min-max')
def setup_projection(self, widget, scaler, conf):
widget['J'] = '-JX%(width)gp/%(height)gpl'
scaler['B'] = '-B%(xinc)g:%(xlabel)s:/2:%(ylabel)s:WSen'
class LogLogPlot(Simple):
def setup_defaults(self):
self.set_defaults(mode='min-max')
def setup_projection(self, widget, scaler, conf):
widget['J'] = '-JX%(width)gpl/%(height)gpl'
scaler['B'] = '-B2:%(xlabel)s:/2:%(ylabel)s:WSen'
class AziDistPlot(Simple):
def __init__(self, *args, **kwargs):
Simple.__init__(self, *args, **kwargs)
self.fixate_widget_aspect = True
def setup_defaults(self):
self.set_defaults(
height=15.*cm,
width=15.*cm,
xmode='off',
xlimits=(0., 360.),
xinc=45.)
def setup_projection(self, widget, scaler, conf):
widget['J'] = '-JPa%(width)gp'
def setup_scaling_plus(self, scaler, axes):
scaler['B'] = '-B%(xinc)g:%(xlabel)s:/%(yinc)g:%(ylabel)s:N'
class MPlot(Simple):
def __init__(self, *args, **kwargs):
Simple.__init__(self, *args, **kwargs)
self.fixate_widget_aspect = True
def setup_defaults(self):
self.set_defaults(xmode='min-max', ymode='min-max')
def setup_projection(self, widget, scaler, conf):
par = scaler.get_params()
lon0 = (par['xmin'] + par['xmax'])/2.
lat0 = (par['ymin'] + par['ymax'])/2.
sll = '%g/%g' % (lon0, lat0)
widget['J'] = '-JM' + sll + '/%(width)gp'
scaler['B'] = \
'-B%(xinc)gg%(xinc)g:%(xlabel)s:/%(yinc)gg%(yinc)g:%(ylabel)s:WSen'
def nice_palette(gmt, widget, scaleguru, cptfile, zlabeloffset=0.8*inch,
innerticks=True):
par = scaleguru.get_params()
par_ax = scaleguru.get_params(ax_projection=True)
nz_palette = int(widget.height()/inch * 300)
px = num.zeros(nz_palette*2)
px[1::2] += 1
pz = num.linspace(par['zmin'], par['zmax'], nz_palette).repeat(2)
pdz = pz[2]-pz[0]
palgrdfile = gmt.tempfilename()
pal_r = (0, 1, par['zmin'], par['zmax'])
pal_ax_r = (0, 1, par_ax['zmin'], par_ax['zmax'])
gmt.xyz2grd(
G=palgrdfile, R=pal_r,
I=(1, pdz), in_columns=(px, pz, pz), # noqa
out_discard=True)
gmt.grdimage(palgrdfile, R=pal_r, C=cptfile, *widget.JXY())
if isinstance(innerticks, str):
tickpen = innerticks
gmt.grdcontour(palgrdfile, W=tickpen, R=pal_r, C=cptfile,
*widget.JXY())
negpalwid = '%gp' % -widget.width()
if not isinstance(innerticks, str) and innerticks:
ticklen = negpalwid
else:
ticklen = '0p'
TICK_LENGTH_PARAM = 'MAP_TICK_LENGTH' if gmt.is_gmt5() else 'TICK_LENGTH'
gmt.psbasemap(
R=pal_ax_r, B='4::/%(zinc)g::nsw' % par_ax,
config={TICK_LENGTH_PARAM: ticklen},
*widget.JXY())
if innerticks:
gmt.psbasemap(
R=pal_ax_r, B='4::/%(zinc)g::E' % par_ax,
config={TICK_LENGTH_PARAM: '0p'},
*widget.JXY())
else:
gmt.psbasemap(R=pal_ax_r, B='4::/%(zinc)g::E' % par_ax, *widget.JXY())
if par_ax['zlabel']:
label_font = gmt.label_font()
label_font_size = gmt.label_font_size()
label_offset = zlabeloffset
gmt.pstext(
R=(0, 1, 0, 2), D="%gp/0p" % label_offset,
N=True,
in_rows=[(1, 1, label_font_size, -90, label_font, 'CB',
par_ax['zlabel'])],
*widget.JXY())
