Coverage for /usr/local/lib/python3.7/dist-packages/pyrocko/io/segy.py : 80%

# http://pyrocko.org - GPLv3 

# 

# The Pyrocko Developers, 21st Century 

# ---|P------/S----------~Lg---------- 

from __future__ import division, absolute_import 

import numpy as num 

import struct 

import calendar 

from pyrocko import trace, util 

from .io_common import FileLoadError 

def ibm2ieee(ibm): 

""" 

Converts an IBM floating point number into IEEE format. 

:param: ibm - 32 bit unsigned integer: unpack('>L', f.read(4)) 

""" 

if ibm == 0: 

return 0.0 

sign = ibm >> 31 & 0x01 

exponent = ibm >> 24 & 0x7f 

mantissa = (ibm & 0x00ffffff) / float(pow(2, 24)) 

print('x', sign, exponent - 64, mantissa) 

return (1 - 2 * sign) * mantissa * float(pow(16, exponent - 64)) 

def unpack_ibm_f4(data): 

ibm = num.fromstring(data, dtype='>u4').astype(num.int32) 

sign = (ibm >> 31) & 0x01 

exponent = (ibm >> 24) & 0x7f 

mantissa = (ibm & 0x00ffffff) / float(pow(2, 24)) 

xxx = (1 - 2 * sign) * mantissa * (16.0 ** (exponent - 64))\ 

.astype(num.float) 

# for i in range(len(data)/4): 

# yyy = ibm2ieee(struct.unpack('>L', data[i*4:(i+1)*4])[0]) 

# print('y', sign[i], exponent[i] - 64, mantissa[i]) 

# print(xxx[i], yyy) 

# if xxx[i] != yyy: 

# sys.exit() 

# print 

return xxx 

class SEGYError(Exception): 

pass 

def iload(filename, load_data, endianness='>'): 

'''Read SEGY file. 

filename -- Name of SEGY file. 

load_data -- If True, the data is read, otherwise only read headers. 

''' 

endianness = endianness 

nbth = 3200 

nbbh = 400 

nbthx = 3200 

nbtrh = 240 

try: 

f = open(filename, 'rb') 

textual_file_header = f.read(nbth) 

if len(textual_file_header) != nbth: 

raise SEGYError('incomplete textual file header') 

binary_file_header = f.read(nbbh) 

if len(binary_file_header) != nbbh: 

raise SEGYError('incomplete binary file header') 

line_number = struct.unpack(endianness+'1I', binary_file_header[4:8]) 

hvals = struct.unpack(endianness+'24H', binary_file_header[12:12+24*2]) 

(ntraces, nauxtraces, deltat_us, deltat_us_orig, nsamples, 

nsamples_orig, format, ensemble_fold) = hvals[0:8] 

(segy_revision, fixed_length_traces, nextended_headers) = \ 

struct.unpack(endianness+'3H', binary_file_header[100:100+3*2]) 

if ntraces == 0 and nauxtraces == 0: 

ntraces = 1 

formats = { 

1: (unpack_ibm_f4, 4, "4-byte IBM floating-point"), 

2: (endianness+'i4', 4, "4-byte, two's complement integer"), 

3: (endianness+'i4', 2, "2-byte, two's complement integer"), 

4: (None, 4, "4-byte fixed-point with gain (obolete)"), 

5: (endianness+'f4', 4, "4-byte IEEE floating-point"), 

6: (None, 0, "not currently used"), 

7: (None, 0, "not currently used"), 

8: ('i1', 1, "1-byte, two's complement integer")} 

dtype = formats[format][0] 

sample_size = formats[format][1] 

if dtype is None: 

raise SEGYError('unsupported sample data format %i: %s' % ( 

format, formats[format][2])) 

for ihead in range(nextended_headers): 

f.read(nbthx) 

atend = False 

while not atend: 

for itrace in range((ntraces+nauxtraces)): 

trace_header = f.read(nbtrh) 

if len(trace_header) == 0: 

atend = True 

break 

if len(trace_header) != nbtrh: 

raise SEGYError('incomplete trace header') 

(scoordx, scoordy, gcoordx, gcoordy) = \ 

struct.unpack(endianness+'4f', trace_header[72:72+4*4]) 

(ensemblex, ensembley) = \ 

struct.unpack(endianness+'2f', trace_header[180:180+2*4]) 

(ensemble_num,) = \ 

struct.unpack(endianness+'1I', trace_header[20:24]) 

(trensemble_num,) = \ 

struct.unpack(endianness+'1I', trace_header[24:28]) 

(trace_number,) = \ 

struct.unpack(endianness+'1I', trace_header[0:4]) 

(trace_numbersegy,) = \ 

struct.unpack(endianness+'1I', trace_header[4:8]) 

(orfield_num,) = \ 

struct.unpack(endianness+'1I', trace_header[8:12]) 

(ortrace_num,) = \ 

struct.unpack(endianness+'1I', trace_header[12:16]) 

# don't know if this is standard: distance to shot [m] as int 

(idist,) = struct.unpack(endianness+'1I', trace_header[36:40]) 

tvals = struct.unpack( 

endianness+'12H', trace_header[94:94+12*2]) 

(nsamples_this, deltat_us_this) = tvals[-2:] 

tscalar = struct.unpack( 

endianness+'1H', trace_header[214:216])[0] 

if tscalar == 0: 

tscalar = 1. 

elif tscalar < 0: 

tscalar = 1.0 / tscalar 

else: 

tscalar = float(tscalar) 

tvals = [x * tscalar for x in tvals[:-2]] 

(year, doy, hour, minute, second) = \ 

struct.unpack(endianness+'5H', trace_header[156:156+2*5]) 

# maybe not standard? 

(msecs, usecs) = struct.unpack( 

endianness+'2H', trace_header[168:168+4]) 

try: 

if year < 100: 

year += 2000 

tmin = util.to_time_float(calendar.timegm( 

(year, 1, doy, hour, minute, second))) \ 

+ msecs * 1.0e-3 + usecs * 1.0e-6 

except Exception: 

raise SEGYError('invalid start date/time') 

if fixed_length_traces: 

if (nsamples_this, deltat_us_this) \ 

!= (nsamples, deltat_us): 

raise SEGYError( 

'trace of incorrect length or sampling ' 

'rate (trace=%i)' % itrace+1) 

if load_data: 

datablock = f.read(nsamples_this*sample_size) 

if len(datablock) != nsamples_this*sample_size: 

raise SEGYError('incomplete trace data') 

if isinstance(dtype, str): 

data = num.fromstring(datablock, dtype=dtype) 

else: 

data = dtype(datablock) 

tmax = None 

else: 

f.seek(nsamples_this*sample_size, 1) 

tmax = tmin + deltat_us_this/1000000.*(nsamples_this-1) 

data = None 

if data is not None and isinstance(dtype, str) and ( 

str(dtype).startswith('<') 

or str(dtype).startswith('>')): 

data = data.astype(str(dtype)[1:]) 

tr = trace.Trace( 

'', 

'%05i' % (line_number), 

'%02i' % (ensemble_num), 

'%03i' % (ortrace_num), 

tmin=tmin, 

tmax=tmax, 

deltat=deltat_us_this/1000000., 

ydata=data, 

meta=dict( 

orfield_num=orfield_num, 

distance=float(idist))) 

yield tr 

except (OSError, SEGYError) as e: 

raise FileLoadError(e) 

finally: 

f.close()