Coverage for /usr/local/lib/python3.11/dist-packages/pyrocko/fomosto/report/report_call.py: 13%
319 statements
« prev ^ index » next coverage.py v6.5.0, created at 2023-10-06 06:59 +0000
1# http://pyrocko.org - GPLv3
2#
3# The Pyrocko Developers, 21st Century
4# ---|P------/S----------~Lg----------
6import os
7import sys
8from optparse import OptionParser, OptionGroup
9from collections import OrderedDict
11from .report_main import GreensFunctionTest as gftest
12from .report_main import FilterFrequencyError as gft_ffe
13from .report_main import FomostoReportError
15spstr = '\n' + ' '*20
16subcmds_desc = OrderedDict([
17 ('single', 'create pdf of a single store'),
18 ('double', 'create pdf of two stores'),
19 ('sstandard', 'create a single store pdf with standard setup'),
20 ('dstandard', 'create a double store pdf with standard setup'),
21 ('slow', 'create a single store pdf, filtering the' +
22 spstr + 'traces with a low frequency'),
23 ('dlow', 'create a double store pdf, filtering the' +
24 spstr + 'traces with a low frequency'),
25 ('shigh', 'create a single store pdf, filtering the' +
26 spstr + 'traces with a low frequency'),
27 ('dhigh', 'create a single store pdf, filtering the' +
28 spstr + 'traces with a low frequency'),
29 ('slowband', 'create a single store pdf with a low' +
30 spstr + 'frequency band filter'),
31 ('dlowband', 'create a double store pdf with a low' +
32 spstr + 'frequency band filter'),
33 ('shighband', 'create a single store pdf with a high' +
34 spstr + 'frequency band filter'),
35 ('dhighband', 'create a double store pdf with a high' +
36 spstr + 'frequency band filter'),
37 ('snone', 'create a single store pdf with unfiltered'
38 ' traces'),
39 ('dnone', 'create a double store pdf with unfiltered'
40 ' traces')])
42subcmds_uses = {
43 'single': 'single <input config file> [options]',
44 'double': 'double <input config file> [options]',
45 'sstandard': 'sstandard <store dir> [options]',
46 'dstandard': 'dstandard <store dir1> <store dir2>'
47 ' <sensor distance minimum>'
48 ' <sensor distance maximum> [options]',
49 'slow': 'slow <store dir> [options]',
50 'dlow': 'dlow <store dir1> <store dir2>'
51 ' <sensor distance minimum>'
52 ' <sensor distance maximum> [options]',
53 'slowband': 'slowband <store dir> [options]',
54 'dlowband': 'dlowband <store dir1> <store dir2>'
55 ' <sensor distance minimum>'
56 ' <sensor distance maximum> [options]',
57 'shighband': 'shighband <store dir> [options]',
58 'dhighband': 'dhighband <store dir1> <store dir2>'
59 ' <sensor distance minimum>'
60 ' <sensor distance maximum> [options]',
61 'shigh': 'shigh <store dir> [options]',
62 'dhigh': 'dhigh <store dir1> <store dir2>'
63 ' <sensor distance minimum>'
64 ' <sensor distance maximum> [options]',
65 'snone': 'snone <store dir> [options]',
66 'dnone': 'dnone <store dir1> <store dir2>'
67 ' <sensor distance minimum>'
68 ' <sensor distance maximum> [options]'}
71def dict_to_string(dic):
72 st = 4
73 st2 = 20
74 s = ''
75 for k, v in dic.items():
76 s += '\n{0}{1}{2}{3}'.format(' '*st, k, ' '*(st2 - st - len(k)), v)
77 return s
80def add_common_options(parser):
81 parser.add_option('--show_defaults', '-d', action='store_false',
82 help='Show the default values of command options.'
83 ' Must be typed before help option.')
84 parser.add_option('--plot_velocity', '-v', action='store_true',
85 help='Plot the velocity traces also.', default=False)
86 parser.add_option('--output-format',
87 help='The format of the report: pdf or html',
88 choices=['pdf', 'html'], default='pdf')
89 parser.add_option('--pdf_dir', '-p',
90 help='The directory where the pdf/html will be saved to.'
91 ' Default is the HOME directory.',
92 default=None)
93 parser.add_option('--output', '-o',
94 help='The full path and name to save the'
95 ' resulting configuration file.',
96 default=None)
97 parser.add_option('--report_only', '-r', dest='plot_everything',
98 action='store_false', default=True,
99 help='Do not plot the trace graphs')
102def add_sensor_options(parser):
103 grp = OptionGroup(parser, 'Seismic sensor distance options')
104 grp.add_option('--distance_min', '-n', type=float, default=None,
105 help="The minimum distance to place sensors. Value of"
106 " 'None' will use store minimum.")
107 grp.add_option('--distance_max', '-x', type=float, default=None,
108 help="The maximum distance to place sensors. Value of"
109 " 'None' will use store maximum.")
110 grp.add_option('--sensor_count', '-c', type=int, default=50,
111 help='The number of sensors to use.')
112 parser.add_option_group(grp)
115def add_source_options(parser):
116 grp = OptionGroup(parser, 'Seismic source options')
117 grp.add_option('--depth',
118 dest='source_depth',
119 type=float,
120 help="The depth of the source. Value of 'None' will place"
121 " source at middle depth of allowed values.",
122 default=None)
123 parser.add_option_group(grp)
126def add_filter_options(parser):
127 grp = OptionGroup(parser, 'Trace frequency filter options')
128 grp.add_option('--lowpass',
129 dest='lowpass_frequency',
130 type=float,
131 help='The value of the lowpass filter applied to traces.',
132 default=None)
133 grp.add_option('--lowpass_rel',
134 dest='rel_lowpass_frequency',
135 type=float,
136 help='''The percentage of the store's sampling rate'''
137 ' to be used as the lowpass filter.',
138 default=None)
139 grp.add_option('--highpass',
140 dest='highpass_frequency',
141 type=float,
142 help='The value of the highpass filter applied to traces.',
143 default=None)
144 grp.add_option('--highpass_rel',
145 dest='rel_highpass_frequency',
146 type=float,
147 help='''The percentage of the store's samping rate'''
148 ' to be used as the lowpass filter.',
149 default=None)
150 parser.add_option_group(grp)
153def add_double_options(parser):
154 grp = OptionGroup(parser, 'Double store plotting options')
155 grp.add_option('--together', '-t', dest='together',
156 action='store_true', default=True,
157 help='Plot both stores on same axes.')
158 grp.add_option('--separate', '-s', dest='together',
159 action='store_false',
160 help='Plot stores next to each other.')
161 parser.add_option_group(grp)
164def cl_parse(command, args, setup=None):
165 usage = '{0} {1}'.format(program_name, subcmds_uses[command])
166 desc = ' '.join(subcmds_desc[command].split())
167 parser = OptionParser(usage=usage, description=desc)
168 add_common_options(parser)
169 if setup:
170 setup(parser)
172 if args and args[0] in ('-d', '--show_defaults'):
173 for opt in parser.option_list:
174 if opt.default == ('NO', 'DEFAULT'):
175 continue
176 opt.help += (' ' if opt.help else '') + '[default: %default]'
177 for grp in parser.option_groups:
178 for opt in grp.option_list:
179 if opt.default == ('NO', 'DEFAULT'):
180 continue
181 opt.help += (' ' if opt.help else '') + '[default: %default]'
182 opts, args = parser.parse_args(args)
183 opts = vars(opts)
184 if 'show_defaults' in opts:
185 del opts['show_defaults']
186 return parser, opts, args
189def verify_arguements(command, allowed, args):
190 if len(args) != allowed:
191 raise TypeError('{0}() takes {1} arguements ({2} given)'.format(
192 command, allowed, len(args)))
194 dir1 = args.pop(0)
195 if not os.path.exists(dir1):
196 raise OSError('Path does not exist: {0}'.format(dir1))
198 if allowed == 1:
199 return dir1
201 dir2 = args.pop(0)
202 if not os.path.exists(dir2):
203 raise OSError('Path does not exist: {0}'.format(dir1))
205 if args:
206 sen_min = float(args.pop(0))
207 sen_max = float(args.pop(0))
208 return dir1, dir2, sen_min, sen_max
209 else:
210 return dir1, dir2
213def verify_options(command, **opts):
214 lpf = None
215 hpf = None
216 rlpf = None
217 rhpf = None
219 tstr = 'lowpass_frequency'
220 if tstr in opts:
221 lpf = opts[tstr]
222 tstr = 'highpass_frequency'
223 if tstr in opts:
224 hpf = opts[tstr]
225 tstr = 'rel_lowpass_frequency'
226 if tstr in opts:
227 rlpf = opts[tstr]
228 tstr = 'rel_highpass_frequency'
229 if tstr in opts:
230 rhpf = opts[tstr]
232 if lpf and rlpf:
233 raise gft_ffe('lowpass')
234 if hpf and rhpf:
235 raise gft_ffe('highpass')
238def command_single(command, args):
239 def setup(parser):
240 parser.set_defaults(plot_velocity=None)
241 parser.set_defaults(plot_everything=None)
243 parser, opts, args = cl_parse(command, args, setup)
244 filename = verify_arguements('single', 1, args)
245 out_filename = opts.pop('output')
246 gft = gftest.createDocumentFromFile(filename, **opts)
247 if out_filename is not None:
248 return gft, out_filename
251def command_sstandard(command, args):
252 def setup(parser):
253 add_source_options(parser)
254 add_sensor_options(parser)
256 parser, opts, args = cl_parse(command, args, setup)
257 st_dir = verify_arguements('sstandard', 1, args)
258 out_filename = opts.pop('output')
259 gft = gftest.runStandardCheck(st_dir, **opts)
260 if out_filename is not None:
261 return gft, out_filename
264def command_slow(command, args):
265 def setup(parser):
266 add_source_options(parser)
267 add_sensor_options(parser)
268 add_filter_options(parser)
269 parser.remove_option('--highpass')
270 parser.remove_option('--highpass_rel')
271 parser.set_defaults(rel_lowpass_frequency=0.25)
273 parser, opts, args = cl_parse(command, args, setup=setup)
274 if opts['lowpass_frequency'] is not None:
275 opts['rel_lowpass_frequency'] = None
276 st_dir = verify_arguements('slow', 1, args)
277 out_filename = opts.pop('output')
278 gft = gftest.runStandardCheck(st_dir, **opts)
279 if out_filename is not None:
280 return gft, out_filename
283def command_shigh(command, args):
284 def setup(parser):
285 add_source_options(parser)
286 add_sensor_options(parser)
287 add_filter_options(parser)
288 parser.remove_option('--lowpass')
289 parser.remove_option('--lowpass_rel')
290 parser.set_defaults(rel_highpass_frequency=0.25)
292 parser, opts, args = cl_parse(command, args, setup=setup)
293 if opts['highpass_frequency'] is not None:
294 opts['rel_highpass_frequency'] = None
295 st_dir = verify_arguements('shigh', 1, args)
296 out_filename = opts.pop('output')
297 gft = gftest.runStandardCheck(st_dir, **opts)
298 if out_filename is not None:
299 return gft, out_filename
302def command_slowband(command, args):
303 def setup(parser):
304 add_source_options(parser)
305 add_sensor_options(parser)
306 add_filter_options(parser)
307 parser.set_defaults(lowpass_frequency=0.0018)
308 parser.set_defaults(highpass_frequency=0.004)
310 parser, opts, args = cl_parse(command, args, setup=setup)
311 st_dir = verify_arguements('slowband', 1, args)
312 verify_options('slowband', **opts)
313 out_filename = opts.pop('output')
314 gft = gftest.runStandardCheck(st_dir, **opts)
315 if out_filename is not None:
316 return gft, out_filename
319def command_shighband(command, args):
320 def setup(parser):
321 add_source_options(parser)
322 add_sensor_options(parser)
323 add_filter_options(parser)
324 parser.set_defaults(rel_lowpass_frequency=0.125)
325 parser.set_defaults(rel_highpass_frequency=0.25)
327 parser, opts, args = cl_parse(command, args, setup=setup)
328 st_dir = verify_arguements('shighband', 1, args)
329 verify_options('shighband', **opts)
330 out_filename = opts.pop('output')
331 gft = gftest.runStandardCheck(st_dir, **opts)
332 if out_filename is not None:
333 return gft, out_filename
336def command_snone(command, args):
337 def setup(parser):
338 add_source_options(parser)
339 add_sensor_options(parser)
341 parser, opts, args = cl_parse(command, args, setup=setup)
342 st_dir = verify_arguements('snone', 1, args)
343 opts['rel_lowpass_frequency'] = None
344 opts['rel_highpass_frequency'] = None
345 out_filename = opts.pop('output')
346 gft = gftest.runStandardCheck(st_dir, **opts)
347 if out_filename is not None:
348 return gft, out_filename
351def command_double(command, args):
352 def setup(parser):
353 add_double_options(parser)
354 parser.set_defaults(plot_velocity=None)
355 parser.set_defaults(plot_everything=None)
357 parser, opts, args = cl_parse(command, args, setup=setup)
358 filename = verify_arguements('double', 1, args)
359 verify_options('double', **opts)
360 out_filename = opts.pop('output')
361 gfts = gftest.createDocumentFromFile(filename, 2, **opts)
362 if out_filename is not None:
363 return gfts, out_filename
366def command_dstandard(command, args):
367 def setup(parser):
368 add_source_options(parser)
369 add_double_options(parser)
371 parser, opts, args = cl_parse(command, args, setup=setup)
372 dir1, dir2, smin, smax = verify_arguements('dstandard', 4, args)
373 out_filename = opts.pop('output')
374 gfts = gftest.runComparissonStandardCheck(dir1, dir2, smin, smax, **opts)
375 if out_filename is not None:
376 return gfts, out_filename
379def command_dlow(command, args):
380 def setup(parser):
381 add_source_options(parser)
382 add_double_options(parser)
383 add_filter_options(parser)
384 parser.remove_option('--highpass')
385 parser.remove_option('--highpass_rel')
386 parser.set_defaults(rel_lowpass_frequency=0.25)
388 parser, opts, args = cl_parse(command, args, setup=setup)
389 if opts['lowpass_frequency'] is not None:
390 opts['rel_lowpass_frequency'] = None
391 dir1, dir2, smin, smax = verify_arguements('dlow', 4, args)
392 opts['rel_highpass_frequency'] = None
393 out_filename = opts.pop('output')
394 gfts = gftest.runComparissonStandardCheck(dir1, dir2, smin, smax, **opts)
395 if out_filename is not None:
396 return gfts, out_filename
399def command_dhigh(command, args):
400 def setup(parser):
401 add_source_options(parser)
402 add_double_options(parser)
403 add_filter_options(parser)
404 parser.remove_option('--lowpass')
405 parser.remove_option('--lowpass_rel')
406 parser.set_defaults(rel_highpass_frequency=0.25)
408 parser, opts, args = cl_parse(command, args, setup=setup)
409 if opts['highpass_frequency'] is not None:
410 opts['rel_highpass_frequency'] = None
411 dir1, dir2, smin, smax = verify_arguements('dhigh', 4, args)
412 opts['rel_lowpass_frequency'] = None
413 out_filename = opts.pop('output')
414 gfts = gftest.runComparissonStandardCheck(dir1, dir2, smin, smax, **opts)
415 if out_filename is not None:
416 return gfts, out_filename
419def command_dlowband(command, args):
420 def setup(parser):
421 add_source_options(parser)
422 add_double_options(parser)
423 add_filter_options(parser)
424 parser.set_defaults(lowpass_frequency=0.0018)
425 parser.set_defaults(highpass_frequency=0.004)
427 parser, opts, args = cl_parse(command, args, setup=setup)
428 dir1, dir2, smin, smax = verify_arguements('dlowband', 4, args)
429 verify_options('dlowband', **opts)
430 out_filename = opts.pop('output')
431 gfts = gftest.runComparissonStandardCheck(dir1, dir2, smin, smax, **opts)
432 if out_filename is not None:
433 return gfts, out_filename
436def command_dhighband(command, args):
437 def setup(parser):
438 add_source_options(parser)
439 add_double_options(parser)
440 add_filter_options(parser)
441 parser.set_defaults(rel_lowpass_frequency=0.125)
442 parser.set_defaults(rel_highpass_frequency=0.25)
444 parser, opts, args = cl_parse(command, args, setup=setup)
445 dir1, dir2, smin, smax = verify_arguements('dhighband', 4, args)
446 verify_options('dhighband', **opts)
447 out_filename = opts.pop('output')
448 gfts = gftest.runComparissonStandardCheck(dir1, dir2, smin, smax, **opts)
449 if out_filename is not None:
450 return gfts, out_filename
453def command_dnone(command, args):
454 def setup(parser):
455 add_source_options(parser)
456 add_double_options(parser)
458 parser, opts, args = cl_parse(command, args, setup=setup)
459 dir1, dir2, smin, smax = verify_arguements('dnone', 4, args)
460 opts['rel_lowpass_frequency'] = None
461 opts['rel_highpass_frequency'] = None
462 out_filename = opts.pop('output')
463 gfts = gftest.runComparissonStandardCheck(dir1, dir2, smin, smax, **opts)
464 if out_filename is not None:
465 return gfts, out_filename
468program_name = 'fomosto report'
469usage = 'Create a pdf of displacment and velocity traces, max. amplitude of' \
470 ' traces and' \
471 " displacment spectra for Green's Function stores.\n\n" \
472 'Usage: {0} <subcommand> <arguments> ... [options]\n\nSubcommands:\n' \
473 '{1}\n\nTo get further help and a list of available options for any' \
474 ' subcommand run:\n\n{2}{0} <subcommand> --help\n\n'. \
475 format(program_name, dict_to_string(subcmds_desc), ' '*4)
478def run_program(args):
479 if len(args) < 1:
480 sys.exit(usage)
482 command = args.pop(0)
483 if command in ('--help', '-h', 'help'):
484 sys.exit(usage)
486 if command in ('--multiple', '-m'):
487 glbs = globals()
488 cmds = []
489 while args and args[0] in subcmds_desc:
490 cmds.append(args.pop(0))
491 for command in cmds:
492 glbs['command_' + command](args)
493 sys.exit()
495 if command not in subcmds_desc:
496 sys.exit('{0}: error: no such subcommand: {1}'.
497 format(program_name, command))
499 if len(args) == 0 or (len(args) == 1 and
500 args[0] in ('-d', '--show_defaults')):
501 args.append('--help')
503 try:
504 lst = globals()['command_' + command](command, args)
505 if lst is not None:
506 gfts = lst[0]
507 with open(lst[-1], 'w') as f:
508 if isinstance(gfts, gftest):
509 f.write(gfts.dump())
510 else:
511 for i in lst[0]:
512 f.write(i.dump())
514 except FomostoReportError as e:
515 sys.exit(str(e))
518if __name__ == '__main__':
519 run_program(sys.argv)